Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F11f
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 307 ITRYKLTSSILFLNQMTGLQ*QRNFI 384
           ITR +  S +L L Q+  L  QRN I
Sbjct: 224 ITRLQENSPLLDLRQLQELHLQRNAI 249


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 416 CNLKITCFGNEMKFLCYCRP 357
           CN K  C  + +  + YC P
Sbjct: 143 CNFKAYCLFSFLNTIVYCVP 162


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 314 DTNLQVAFYF*IK*LAYNNKGISFHFRNK 400
           +TN +V     +K +    KG+ F FR++
Sbjct: 147 NTNTEVVINTEVKSIPVTKKGVYFAFRDQ 175


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +3

Query: 135 WLKLPQHHTFFMI 173
           WL++ +HH F  +
Sbjct: 122 WLQMTKHHNFIKV 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,435
Number of Sequences: 438
Number of extensions: 2000
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)