Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   3.0  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   6.8  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -1

Query: 356 ENNKKIEEAQRKLAEE--RLAMIEEQRK 279
           E  ++I E + ++AEE  RLA +EE RK
Sbjct: 262 EEEQRIREEEARIAEEEKRLAEVEEARK 289


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 356 ENNKKIEEAQRKLAEERLAMIEEQRK 279
           E NKK E  ++   E+RL +++EQ K
Sbjct: 153 EANKKRERQEKSDEEQRLRLLDEQIK 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,344
Number of Sequences: 5004
Number of extensions: 17651
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)