Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    29   1.7  
05_05_0175 + 22966151-22967614                                         28   5.2  
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    27   9.1  

>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 348 QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSRQEQ 196
           +K  R   +  G++  DD R K+    +   E R  + +K+G +EDS  ++
Sbjct: 236 EKRSRHDKKDHGQDSEDDERRKRRHATSEDDEPRKSQKEKKGQREDSEDDK 286


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 279 NG*GTTKAEKRTREADKRGTKEDSRQEQFTA 187
           N   TT A+KR ++  +RG +   + E+ TA
Sbjct: 229 NAIATTSADKRPKKTPRRGARSSKQDEEATA 259


>05_07_0329 -
           29308867-29308932,29309040-29309159,29309245-29309364,
           29309566-29310123,29310199-29310258,29310839-29310904,
           29310993-29311103,29311167-29311257,29311349-29311449,
           29311534-29311641,29311737-29314205
          Length = 1289

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 359 AENNKKIEEAQR--KLAEERLAMIEEQRKMD 273
           AE  KK EE +R  K  EERL   EE+RK +
Sbjct: 438 AEERKKREEEERLRKEEEERLKKEEEERKAE 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,953,319
Number of Sequences: 37544
Number of extensions: 99734
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)