Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27989| Best HMM Match : Involucrin2 (HMM E-Value=1.2) 43 1e-04
SB_49422| Best HMM Match : GPS (HMM E-Value=1.9) 29 1.8
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 3.1
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20) 28 4.1
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_57058| Best HMM Match : ROKNT (HMM E-Value=8) 28 4.1
SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 27 7.1
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 27 9.4
>SB_27989| Best HMM Match : Involucrin2 (HMM E-Value=1.2)
Length = 192
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/31 (58%), Positives = 28/31 (90%)
Frame = -1
Query: 365 IMAENNKKIEEAQRKLAEERLAMIEEQRKMD 273
++AE +K +E+AQ+KLAEERLAM+EE+R ++
Sbjct: 120 LVAEKDKLLEDAQQKLAEERLAMVEERRTLN 150
>SB_49422| Best HMM Match : GPS (HMM E-Value=1.9)
Length = 352
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 312 REISDDRR--TKKNG*GTTKAEKRTREADKRGTKED 211
+E+ + RR K N TTK +K+ R+ K+G K D
Sbjct: 176 KEMQEQRRRMAKNNEDKTTKGQKKVRKGSKKGEKSD 211
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -3
Query: 384 KERTRRHHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
KER ++ + + T++ RE +DR +K + E+R +E +K KE R
Sbjct: 593 KERQKKEEKEESSHSDEDTSRDRNREKENDREREKEREKEKEKEERDKEREKEKEKEKER 652
Query: 204 QEQ 196
+++
Sbjct: 653 EKE 655
>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
Length = 1803
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 336 RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
R TA G S DRRT G T ++RT + GT D R
Sbjct: 882 RRTADKVGGGTSRDRRTADKVGGGTSRDRRTADKVGGGTSRDRR 925
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 336 RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
R TA G S DRRT G T ++RT + GT D R
Sbjct: 910 RRTADKVGGGTSRDRRTADKVRGDTSGDRRTVDKVGGGTSRDRR 953
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3
Query: 336 RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADK 229
R TA G E S DRRT G T ++RT ADK
Sbjct: 1008 RRTADKVGGETSGDRRTADKVGGETSGDRRT--ADK 1041
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 336 RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRG 223
RS + GG E S DRRT G T ++RT ADK G
Sbjct: 995 RSADKVGG-ETSGDRRTADKVGGETSGDRRT--ADKVG 1029
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 285 KKNG*GTTKAEKRTREADKRGTKEDSRQEQ 196
+KN G TK E++ R DK+ +E+S++ +
Sbjct: 176 EKNETGETKEERKKRHKDKKKKREESKERR 205
>SB_57058| Best HMM Match : ROKNT (HMM E-Value=8)
Length = 200
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 366 HHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
++G + N S A G R + + T N GTT +KRT DK D R
Sbjct: 100 YNGKRTADNAESAAYNGKRTADNGKHTAYNIEGTTDNDKRTTYNDKSTAHNDKR 153
>SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 318 GGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
GG+ + D+RT+ NG G +KRTR K G D R
Sbjct: 393 GGKHL--DKRTRFNGKGGKHLDKRTRFNGKGGEHLDKR 428
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 294 RRTKKNG*GTTKAEKRTREADKRGTKEDSRQ 202
+RT +NG T + +KRT E +R KE +R+
Sbjct: 159 KRTDRNGYLTGQVDKRTLEKYEREAKEKNRE 189
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 384 KERTRRHHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
+ R RRH + +K RS + R S DRR ++ + + R R + +R K SR
Sbjct: 297 RHRDRRHSRDRDRKRSRSRDRRKSRSRSRDRRRSRS--RERRRDDRKRRSRERSPKRRSR 354
Query: 204 QEQ 196
+ +
Sbjct: 355 ERE 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,208,699
Number of Sequences: 59808
Number of extensions: 121495
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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