Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   5.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 350 NKKIEEAQRKLAEE 309
           +KK+EE+ RKL EE
Sbjct: 374 SKKLEESMRKLDEE 387


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/70 (18%), Positives = 30/70 (42%)
 Frame = -3

Query: 384 KERTRRHHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
           KE+ RR+     +K      +   +  S  R  ++N     K  ++ RE  K  +++   
Sbjct: 13  KEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRE 72

Query: 204 QEQFTAKVVV 175
           +E+   + ++
Sbjct: 73  RERSKERKII 82


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/70 (18%), Positives = 30/70 (42%)
 Frame = -3

Query: 384 KERTRRHHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
           KE+ RR+     +K      +   +  S  R  ++N     K  ++ RE  K  +++   
Sbjct: 13  KEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRE 72

Query: 204 QEQFTAKVVV 175
           +E+   + ++
Sbjct: 73  RERSKERKII 82


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 18/108 (16%), Positives = 44/108 (40%)
 Frame = -3

Query: 384 KERTRRHHG*K*QKN*RSTAQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSR 205
           KE+ RR+     +K      +   +  S  R  ++N     +  ++ RE  K  +++ + 
Sbjct: 246 KEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTE 305

Query: 204 QEQFTAKVVV*FETTLMILKKKHYISDGHLMQLSSLVNF*YLSRSSLY 61
           +E+     ++   +   I    +Y ++ +    ++  N  Y +   LY
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,707
Number of Sequences: 438
Number of extensions: 1063
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)