Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32610.1 68417.m04643 mitochondrial glycoprotein family prote...    30   0.82 
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00...    29   1.9  
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S...    28   3.3  
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME...    28   4.4  
At5g41020.1 68418.m04986 myb family transcription factor contain...    27   5.8  
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related...    27   5.8  
At2g30960.1 68415.m03776 expressed protein                             27   5.8  
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY...    27   7.7  
At1g79200.1 68414.m09234 expressed protein                             27   7.7  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    27   7.7  
At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00...    27   7.7  

>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SP|P40513
           Mitochondrial acidic protein MAM33, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02330: Mitochondrial glycoprotein
          Length = 557

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 312 REISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSRQE 199
           +E++D+   K+N  G +KA K+ ++ DK+   ++S+ E
Sbjct: 201 KEVNDEGEKKENTTGESKASKKKKKKDKQKELKESQSE 238


>At1g10890.1 68414.m01251 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 592

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 365 IMAENNKKIEEAQRKLAEERLAMIEEQ 285
           I  EN K++EEAQRK A ER    EE+
Sbjct: 158 IAEENLKRVEEAQRKEAMERQRKEEER 184


>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
           SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
           from [Arabidopsis thaliana]
          Length = 373

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 327 AQAGGREISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSRQEQFTAKV 181
           ++ GG  + D+  + K+G  +  + KR R A+     E  R+ +   K+
Sbjct: 169 SEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKM 217


>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase
           (METII) nearly identical to cytosine-5 methyltransferase
           (METII) [Arabidopsis thaliana] GI:6523846
          Length = 1519

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 309 EISDDRRTKKNG*GTTKAEKRTREADKRGTKEDSRQEQFTAKVVV*FETT 160
           ++S +RR K+    T   EK  R +DK  T E +++EQ  A+ +V  + T
Sbjct: 20  DVSKERRPKRAAACTNFKEKSLRISDKSETVE-AKKEQILAEEIVAIQLT 68


>At5g41020.1 68418.m04986 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 588

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 303 SDDRRTKKNG*GTTK-AEKRTREADKRGTKEDSRQEQFTAK 184
           S+D  T++NG  +TK A+KR ++  K+   E S  E+ + K
Sbjct: 220 SEDSETEENGLNSTKDAKKRRKKKKKKKQSEVSEAEEKSDK 260


>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 572

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -3

Query: 330 TAQAGGREISDD----RRTKKNG*GTTKAEKRTREADKRGTKEDSRQEQFTAKVVV*FET 163
           ++  GG + SDD    +RT K     T  E+ T++  K+ TK +++     +  +   E 
Sbjct: 10  SSPGGGGDDSDDNPPQKRTSKRTASETATEEETKKKKKKKTKHNTKMASPPSNRIWNEED 69

Query: 162 TLMILK 145
            L ILK
Sbjct: 70  ELSILK 75


>At2g30960.1 68415.m03776 expressed protein
          Length = 260

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 365 IMAENNKKIEEAQRKLAEERLAMIEEQRK 279
           + AE  KKIEE   K AEE   M    RK
Sbjct: 51  LQAEEEKKIEEEDLKKAEEEKRMNRSNRK 79


>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
           similar to Ara4-interacting protein [Arabidopsis
           thaliana] GI:13160609; contains Pfam profiles PF00789:
           UBX domain, PF02809: Ubiquitin interaction motif
          Length = 564

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 362 MAENNKKIEEAQRKLAEERLAMIEEQRKMD 273
           + E  KK EEAQRKL EE+    E +R++D
Sbjct: 444 LEEEKKKEEEAQRKLEEEQ----ELERQLD 469


>At1g79200.1 68414.m09234 expressed protein
          Length = 159

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 336 RSTAQAGGREISDDRRTKKNG*GTTKA-EKRTREADKRGTKEDSRQEQFTAK 184
           RS A++     SD     K   GT K  E+R+R +DK+  K     +  T+K
Sbjct: 12  RSRARSEDSSSSDYEEKVKRHRGTEKDDERRSRRSDKKDKKSHKHHKSSTSK 63


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 356 ENNKKIEEAQRKLAEERLAMIEEQRK 279
           +  K++EE  R+LAE+R A+ E++R+
Sbjct: 326 KKGKRLEEEIRELAEDRNALTEKKRQ 351


>At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 346

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 39  VSFPSKLCIKTIY*GIKNLLNYLTA 113
           + FP +LC+KT++  + N L  ++A
Sbjct: 185 IRFPKELCLKTLFTAVDNNLTLISA 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,709,398
Number of Sequences: 28952
Number of extensions: 89658
Number of successful extensions: 285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)