Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 42 3e-04
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 40 0.001
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 38 0.004
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 37 0.009
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 37 0.009
SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1) 32 0.33
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 31 0.44
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5) 31 0.58
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027) 31 0.76
SB_7650| Best HMM Match : SLR1-BP (HMM E-Value=0.71) 30 1.0
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 30 1.0
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 30 1.3
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 29 1.8
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 29 1.8
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 29 2.3
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 29 2.3
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20) 29 2.3
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45) 29 2.3
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2) 29 3.1
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 29 3.1
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 4.1
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 28 4.1
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 28 5.4
SB_54394| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 28 5.4
SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8) 28 5.4
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 28 5.4
SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44) 28 5.4
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 28 5.4
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7) 28 5.4
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 25 5.8
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 7.1
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06) 27 7.1
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 7.1
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 7.1
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.4
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 27 9.4
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 9.4
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14) 27 9.4
SB_55403| Best HMM Match : Homeobox (HMM E-Value=8e-07) 27 9.4
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 9.4
SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42) 27 9.4
SB_30581| Best HMM Match : CX (HMM E-Value=0.73) 27 9.4
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 27 9.4
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 233 SCRSPCCNSICCSYSCTLRCTFCYSNRCGTSC---CSSSGILCCFA-ILCWCC 379
SCR CC+ YSC + C C + +SC CSS + CC ++C+ C
Sbjct: 243 SCRVACCSCRVVCYSCRVACCSCRVHMKCSSCRVVCSSCRVACCSCRVVCYSC 295
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Frame = +2
Query: 233 SCRSPCCNSICCSYSCTLRCTFCYSNRCGT-----SC---CSSSGILCCFA-ILCWCCSN 385
SCR CC+ YSC + C C C SC C S + CC ++C+ C
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRV 204
Query: 386 PASGSLHSPCSC---CIRCRLPIWS 451
+ CSC C CR+ +S
Sbjct: 205 VFCSCRVACCSCRVVCYSCRVVCYS 229
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +2
Query: 233 SCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSP 412
SCR CC+ YSC R FC C +CCS + ++C+ C A S
Sbjct: 187 SCRVACCSCRVVCYSC--RVVFC---SCRVACCSCRVVCYSCRVVCYSC-RVACCSCRVV 240
Query: 413 C-SC---CIRCRLPIWS 451
C SC C CR+ +S
Sbjct: 241 CYSCRVACCSCRVVCYS 257
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 233 SCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSP 412
SCR CC+ YSC R FC C +CCS + C++ CCS +
Sbjct: 124 SCRIACCSCRVVCYSC--RVVFC---SCRVACCSCR--VVCYSCRVACCSCRV-----AC 171
Query: 413 CSC---CIRCRLPIWS 451
CSC C CR+ +S
Sbjct: 172 CSCRVVCYSCRVVCYS 187
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 260 ICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCC--SNPASGSLHSPCSCCIRC 433
+C +Y+ + C+ C +CCS + C ++C C ++ H +CC C
Sbjct: 363 LCVAYAVVVCCS------CRVACCSCRVVCCSCRVVCCSCRVAHAVLRVPHGAVACC-SC 415
Query: 434 RLPI 445
RL +
Sbjct: 416 RLGV 419
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 415
C PCC +CC+ SC R C + SCC+ + C A+LC S A C
Sbjct: 352 CVVPCCVVLCCAVSC--RAVLCRA----VSCCA----VLCRAVLCRAVSCRAVLCRAVLC 401
Query: 416 SCCIRCRLPIWSSTSSTFPVWICTSVCSI 502
+ CR+ + + S VW C +C +
Sbjct: 402 -LAVLCRVVLCRAVSCC-TVWCCVVLCRV 428
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +2
Query: 236 CRSPCCNSICC-SYSCTLRC--TFCYSNRCGTSCCSSSGILCCFAILC 370
C PCC +CC C + C C C + C + CC A+ C
Sbjct: 462 CVVPCCVVLCCVVLYCVVLCRVVLCRDVLCRAALCRVVQLSCC-AVSC 508
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +2
Query: 230 RSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHS 409
R R C +CC + C C RC +CC + CC CC
Sbjct: 87 RVMRCVACRVMCCVACFVMHCVACCVMRC-VACCVMRCVACCVMRCVGCCVMRCVACRVM 145
Query: 410 PC-SCCI-RC 433
C +CC+ RC
Sbjct: 146 RCVACCVMRC 155
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Frame = +2
Query: 236 CRSPCCNS---ICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLH 406
CR CC + + C C +RC C RC +CC + CC CC
Sbjct: 22 CRVMCCVACFVMHCVACCVMRCVACCVMRC-VACCVMRCVACCVMHCVACCVMRCVACRV 80
Query: 407 SPCSCC--IRC 433
C C +RC
Sbjct: 81 MRCVACRVMRC 91
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = +2
Query: 230 RSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHS 409
R R C +CC + C C RC +CC + CC CC +H
Sbjct: 15 RVMRCVGCRVMCCVACFVMHCVACCVMRC-VACCVMRCVACCVMRCVACC------VMHC 67
Query: 410 PCSCCIRC 433
C +RC
Sbjct: 68 VACCVMRC 75
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCC 379
CC C C +RC C RC +CC + CC CC
Sbjct: 126 CCVMRCVG-CCVMRCVACRVMRC-VACCVMRCVACCVMRCVDCC 167
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCGTSC----CSSSGILCCFAILCWCCSNPASGSLHSPC 415
CC C + C +RC C RC +C C + ++CC A C+ A +
Sbjct: 62 CCVMHCVA-CCVMRCVACRVMRC-VACRVMRCVACRVMCCVA--CFVMHCVACCVMRCVA 117
Query: 416 SCCIRC 433
C +RC
Sbjct: 118 CCVMRC 123
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +2
Query: 263 CCSYSCT----LRCTFCYSNRCGTSCCSSSGILCCFAILCWCC 379
CC C +RC C RC +CC + CC ++ +CC
Sbjct: 134 CCVMRCVACRVMRCVACCVMRC-VACCVMRCVDCC--VVTFCC 173
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 239 RSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCF 358
R C + C C +RC C RC CC + CC+
Sbjct: 138 RCVACRVMRCVACCVMRCVACCVMRC-VDCCVVT--FCCY 174
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = -1
Query: 410 ESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRS 231
E W+DWS +V S C SS S + G S S+ SC+ GY +
Sbjct: 205 EKFNFHWEDWSFRDVV-PSERNCAGNSSAPTPCVAGSANSNTGSSDSSACVSCSAGYNAT 263
Query: 230 EG----RCCYQRTQCPAGDINLCS 171
EG C +C G +LC+
Sbjct: 264 EGSTACSACPAGYECSVGTASLCT 287
>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
Length = 138
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +2
Query: 230 RSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHS 409
R R C +CC + C C RC +CC + CC CC
Sbjct: 7 RVMRCVGCRVMCCVACFVMHCVACCVMRC-VACCVMRCVACCVMRCVGCCVMRCVACRVM 65
Query: 410 PC-SCCI-RC 433
C +CC+ RC
Sbjct: 66 RCVACCVMRC 75
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +2
Query: 236 CRSPCCNS---ICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCF--AILCWCCSNPASGS 400
CR CC + + C C +RC C RC +CC + CC + C A
Sbjct: 14 CRVMCCVACFVMHCVACCVMRCVACCVMRC-VACCVMRCVGCCVMRCVACRVMRCVACCV 72
Query: 401 LHSPCSCCIRC 433
+ C +RC
Sbjct: 73 MRCVACCVMRC 83
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCC 379
CC C C +RC C RC +CC + CC CC
Sbjct: 46 CCVMRCVG-CCVMRCVACRVMRC-VACCVMRCVACCVMRCVDCC 87
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +2
Query: 263 CCSYSCT----LRCTFCYSNRCGTSCCSSSGILCCFAILCWCC 379
CC C +RC C RC +CC + CC ++ +CC
Sbjct: 54 CCVMRCVACRVMRCVACCVMRC-VACCVMRCVDCC--VVTFCC 93
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 239 RSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCF 358
R C + C C +RC C RC CC + CC+
Sbjct: 58 RCVACRVMRCVACCVMRCVACCVMRC-VDCCVVT--FCCY 94
>SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)
Length = 743
Score = 31.9 bits (69), Expect = 0.33
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
Frame = -1
Query: 425 CSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNR 246
C+R+R RW+D + ++W C S++R T W S R V S S R
Sbjct: 556 CARNRRYASQRWKDSAKAWLLW-----CP-GSARRTSTPW-SVRSFVVAPLNSVPSSTMR 608
Query: 245 GYGRSEGRC--CYQRTQCPAGDINLCSVWRNVLRYSLSVSHVGWSNQRSSGYCWNSC 81
G C + RT+ + V+R R V H + S+ YC N C
Sbjct: 609 TLGHPPTGCELTHLRTRSMEDEATSGVVYRTTERIEFFVGHALRRHYVSAMYC-NRC 664
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Frame = +2
Query: 233 SCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILC-----CFAILCWCCSNPASG 397
SC+ P C CCS + + C + CG C + +L C +P+
Sbjct: 1353 SCK-PDCPIKCCSNALSSCPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPSACSPSGC 1411
Query: 398 SLHSPCSCCIRCRLPIWSSTSSTFPVWICTSVCS 499
+ P CCI P+ ++T C S CS
Sbjct: 1412 NPDCPARCCITVLQPLNEKHNTTAE---CPSECS 1442
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/90 (22%), Positives = 32/90 (35%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 415
C C S C C ++C S+ C C + C +I C A +
Sbjct: 1553 CPVYCLTS--CKPDCPIKCCTKLSSSCPADCSPQNCKSSCPSICCITIRGSAKEEQQNSF 1610
Query: 416 SCCIRCRLPIWSSTSSTFPVWICTSVCSID 505
C ++C +S PV C+ ++D
Sbjct: 1611 ECPVKC----LTSCEPECPVRCCSGSQTLD 1636
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +2
Query: 230 RSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCC 331
RSC C CC C + C C CC
Sbjct: 1180 RSCEEGCPEQ-CCQNGCPVECLSSCKPHCPPRCC 1212
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Frame = +2
Query: 242 SPCCNSIC---CSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSP 412
S C IC C SC + C +SN C C + + C + C P +
Sbjct: 1284 SQSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPSECCLTVLTPLKENKSHQ 1343
Query: 413 CSCCIRCRLPIWSSTSSTFPVWICTSVCS 499
C C S P+ C++ S
Sbjct: 1344 EGCPAVCS----ESCKPDCPIKCCSNALS 1368
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 251 CNSIC---CSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSC 421
C ++C C C ++C + C SC SG C CC +G S SC
Sbjct: 1346 CPAVCSESCKPDCPIKCCSNALSSCPQSC---SGDHCGAECPTQCCLLADNGQHSSTASC 1402
Query: 422 CIRC 433
C
Sbjct: 1403 PSAC 1406
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 227 LRSCRSPCC--NS--ICCSYSCTLRCTFCYSNRCGTSCCSSS 340
L SC S CC NS + C SC CT C CC +S
Sbjct: 1782 LPSCPSTCCIKNSPPVVCPKSCETTCT----PDCPVMCCKNS 1819
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 353 SIGCRYWSSKRCRTYWSSKRCSVG---CSYRSSKWSCN 249
S+GCRYWS W++K C VG S R +CN
Sbjct: 2195 SVGCRYWS--LASNTWTTKGCKVGRRRSSGRQLSCTCN 2230
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILC-WCCSNPASGSLHSP 412
CR+PC + C ++C C C R C S C + C C P + + P
Sbjct: 1891 CRTPCNAKLKCLHTCAGNCNSCLQQRVHEQCKSK----CDRTLFCGHSCQEPCTKNC-PP 1945
Query: 413 C 415
C
Sbjct: 1946 C 1946
>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1444
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 441 GSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 322
G R+Q+E E ++ + ++Q QH ++ + LL+QQE
Sbjct: 368 GDEVRLQREMLEQQQKIIKMQQQQHQQHEEQQQRLLKQQE 407
>SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5)
Length = 138
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 441 GSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 322
G R+Q+E E ++ + ++Q QH ++ + LL+QQE
Sbjct: 89 GDEVRLQREMLEQQQKIIKMQQQQHQQHEEQQQRLLKQQE 128
>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
Length = 442
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 415
C S CN C C + CY + C +C SS + C A C +G C
Sbjct: 96 CSSRMCNQTCIRAGCKME---CYGDECHQTCQSSGCDVTCPAASKVCVQVCITGRCTMRC 152
Query: 416 SCCI-RCRLPIWSSTSSTF-PVWICTSVCS 499
+ RC + + C S CS
Sbjct: 153 GRGVGRCEQKCLAGKCAMICEARECVSTCS 182
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Frame = +2
Query: 251 CNSICCSYSCTLRCTF-------CYSNRCGTSCCSS 337
C IC S C L+C C + RC ++ CSS
Sbjct: 63 CGQICNSAKCNLQCAVKQECNQTCIAGRCVSAVCSS 98
>SB_7650| Best HMM Match : SLR1-BP (HMM E-Value=0.71)
Length = 439
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Frame = -1
Query: 305 SSKRCSVGCSYR--SSKWS--CNRG--YGRSEGRCC 216
S +R C +R +SK + CNRG YGR+ GRCC
Sbjct: 58 SERRACADCLHRCGTSKDASICNRGIGYGRTRGRCC 93
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC 415
C S CN C C + CY C +C SS + C A C +G C
Sbjct: 96 CSSRMCNQTCIRAGCKME---CYGEECHQTCQSSGCDVTCPAASKVCVQVCITGRCTMRC 152
Query: 416 SCCI-RCRLPIWSSTSSTF-PVWICTSVCS 499
+ RC + + C S CS
Sbjct: 153 GRGVGRCEQKCLAGKCAMICEARECVSTCS 182
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Frame = +2
Query: 251 CNSICCSYSCTLRCTF-------CYSNRCGTSCCSS 337
C IC S C L+C C + RC ++ CSS
Sbjct: 63 CGQICNSAKCNLQCAVKQECNQTCIAGRCVSAVCSS 98
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCS 382
CR+ C +C C +RCT ++C +C G C F CS
Sbjct: 439 CRARNCTQLCPRGGCRMRCT-SRVDKCVQACNPREG-QCRFECHAKSCS 485
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCT--FCYSN-RCGTSC 328
C CNS C +CT CT C+SN +C C
Sbjct: 91 CTDVACNSHTCLQTCTSNCTNMECHSNTKCTQEC 124
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/82 (26%), Positives = 27/82 (32%)
Frame = +2
Query: 188 RQQGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAIL 367
R G S D + PC C + +C R C S C C+S L
Sbjct: 52 RNMGYGSCDQLCLQNKDQKPCPRLKCAASTCNQR---CLSGGCTDVACNS------HTCL 102
Query: 368 CWCCSNPASGSLHSPCSCCIRC 433
C SN + HS C C
Sbjct: 103 QTCTSNCTNMECHSNTKCTQEC 124
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSG 343
C+S C C C ++C + C +C S+G
Sbjct: 267 CKSRWCGVTCTGSGCDVKCPNNGTESCDQTCQKSAG 302
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 350 IGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSC 252
+GC YW + WS++ C VG + SS+ C
Sbjct: 1786 VGCMYWDE--VQENWSTRGCRVGPNTSSSRTHC 1816
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 353 CFAILCWCCSNPASGSLHSPCSC-CIRCRLPIWSSTSSTFPVWICTSVCSI 502
C+ LC C + S PC C C++C P ++ P W +CS+
Sbjct: 220 CYVNLCCCVTCRCSVCTCCPCDCTCLQC-APCIVFSALCCPFWSLCLLCSM 269
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 353 CFAILCWCCSNPASGSLHSPCSC-CIRCRLPIWSSTSSTFPVWICTSVCSI 502
C+ LC C + S PC C C++C P ++ P W +CS+
Sbjct: 220 CYVNLCCCVTCRCSVCTCCPCDCPCLQC-APCIVFSALCCPFWSLCLLCSM 269
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 326 CCSSSGILCCFAILCWCCSNPASGSLHSPCSCCIR 430
CC + GI + + CS+P S + P SCCI+
Sbjct: 138 CCGAKGINDWDKNIYFNCSSPGSEACGVPYSCCIK 172
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 395 GSLHSPCSCCIRCRLPIWSSTSSTFP-VWIC 484
G+ HS C C RCR P+ T + W+C
Sbjct: 80 GTYHSDCFVCSRCRKPLAGKTFTEHEGSWVC 110
>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 245 PCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSL 403
P C C C L + C G+S CS LCC + C C N A+ S+
Sbjct: 587 PACGDDCDCDRCELTISGCPGQTKGSSVCS----LCCMS-ECECEENSAAPSV 634
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 29.5 bits (63), Expect = 1.8
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Frame = -1
Query: 392 WQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWS--CNRGYGRSEGRC 219
W + + W + Y + C + C C++ W+ C YG + C
Sbjct: 2057 WNNCCTHEYGWNNCCTHEYGWNNCCTHEYGWNNC---CTHEYG-WNNCCTHEYGWNN--C 2110
Query: 218 C---YQRTQCPAGDINLCSVWRNVLRYSLSVSHV-GWSNQRSSGYCWNSCDCT 72
C Y C + + N R++ +H GWSN S Y W +C CT
Sbjct: 2111 CTHEYGWNNCCTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSHEYGWYNC-CT 2162
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Frame = -1
Query: 392 WQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWS--CNRGYGRSEGRC 219
W + + W + Y + C + C C++ W+ C YG + C
Sbjct: 2067 WNNCCTHEYGWNNCCTHEYGWNNCCTHEYGWNNC---CTHEYG-WNNCCTHEYGWNN--C 2120
Query: 218 C---YQRTQCPAGDINLCSVWRNVLRYSLSVSH-VGWSNQRSSGYCWNSCDCT 72
C Y C + + + +S SH GW N ++ Y WN+C CT
Sbjct: 2121 CTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSHEYGWYNCCTNEYGWNNC-CT 2172
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 251 CNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPC-SCC 424
C S+C + CT C ++R S C S C ++C C A +HS C S C
Sbjct: 277 CVSLCAQCMRVVMCTVC-ASRYVHSVCVSLCTQCMRVVMCTVC---ACRYIHSVCVSLC 331
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +2
Query: 233 SCRSPCC--NSICCSYSCTLRCTFCY-SNRCGTSCCSSSGILCCFAILCWCCSNPASGSL 403
+C PC N C + + C Y N C C + C + C C +N ++
Sbjct: 625 NCTLPCACVNGSCNATDGSCNCAAGYHGNACDRPCPAGKHGANC-GLKCLCANNGTCNAI 683
Query: 404 HSPCSC 421
CSC
Sbjct: 684 TGRCSC 689
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 224 GLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSS 337
GL +C S CC CS++ +L T CY C C S
Sbjct: 938 GLDACLSLCCGLKWCSHA-SLEGTECYGVACTGPGCGS 974
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Frame = -1
Query: 326 KRCRTYWSSKRCSVGCSYRSSK---WSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRNV 156
K C T W + C+ C+ R+ +SCN G + C+ CS++
Sbjct: 1096 KHCLTSWYGENCTAYCTPRNDSTGHFSCNETTGSKD---CHDGWYG-----GTCSIY--C 1145
Query: 155 LRYSLSVSHVGWSNQRSSGYC---WNSCDCTRFSSNYKGSSDEY 33
L ++ S H C W +CT F S + S D Y
Sbjct: 1146 LPHNGSSGHYDCDASSGRKTCHVDWYGINCTVFCSKPRDSKDHY 1189
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Frame = -1
Query: 329 SKRCRTYWSSKRCSVGCSYRSS---KWSCNRGYGRSEGRCCYQRTQCPA-GDINLCSVWR 162
SK C W + C+V C +SS +SC+ G + C L
Sbjct: 1027 SKLCHPDWFGENCTVHCKAQSSDNQNYSCDNATGSKICHSNWYGENCTVYCKAQLSDHQH 1086
Query: 161 NVLRYSLSVSH--VGWSNQRSSGYCWNSCDCT-RFSSN-YKGSSDEYD 30
+ + H W + + YC D T FS N GS D +D
Sbjct: 1087 YICDNTTGKKHCLTSWYGENCTAYCTPRNDSTGHFSCNETTGSKDCHD 1134
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 452 WTIWVAGSVCSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWS 303
WT W + +R+R S GS + ST +VW + + Y K YW+
Sbjct: 194 WTEWGQDARITRARLSDGSGKEVLVSTGLVWPNGLAMDYVDKK---IYWA 240
>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
Length = 1362
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNP 388
CC S SC+ RCT Y+ C S + I CF + S+P
Sbjct: 434 CCYSYVMVSSCSERCTIRYNAMHNNPCLSRTQI--CFHVCVTGSSSP 478
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Frame = +2
Query: 251 CNSICCSYSCTLRCTFCYSNRC--GTSCCSSSGILCCFAILCWC---CSNPASGSLHSPC 415
C ++C FCYS+ C G +C SS C + + C+ L +PC
Sbjct: 2154 CKGGYTGWNCNTLIDFCYSDPCAYGATCVSSLADYTCACVPGYTGRNCTTNIDDCLSAPC 2213
Query: 416 SCCIRC 433
C
Sbjct: 2214 KNGATC 2219
>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
Length = 443
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Frame = -1
Query: 344 CRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRS------EGRCCYQRTQCPAGDI 183
C +++C+ +W ++C V C R +++C G G C T C A D
Sbjct: 234 CLANGTRKCQQHWYGQQCHVFCQPRPIQYTCQSTTGAKVCSQGWYGEDC--STFCKARDS 291
Query: 182 NLCSVWRNVLRYSLSVSHVGWSNQRSSGYC 93
+ + + R V H+ W YC
Sbjct: 292 DWFGHF-DCDRNGSRVCHMYWHGPECKAYC 320
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 326 KRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQC 198
K C W C V C+ SS ++CN+ G + T C
Sbjct: 696 KVCHRDWYGPFCDVNCNSNSSHFTCNKTTGARVCHSNWYGTYC 738
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 227 LRSCRSPCC-NSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNP 388
L +CR N IC + RC S++C + +G+ CC + C+ P
Sbjct: 3203 LETCREKATDNRICPKVTPPDRCPSGASDQCASDSDCQTGLKCCSSGCILTCTQP 3257
>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
Length = 369
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +2
Query: 290 CTFCYSNRC--GTSCCSSSGILCCFAILCWCCSNPASGS 400
C F +C GT C ++ C LC C NP S +
Sbjct: 2 CIFNCIGKCIGGTCKCVGKSLMACLRGLCKCFCNPVSAA 40
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -1
Query: 425 CSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNR 246
C+R+R RW+D + ++W S S++R T W S R V S S R
Sbjct: 966 CARNRRCASQRWKDSAKAWLLWCPS------SARRTSTPW-SVRSFVVAPLNSVPSSTMR 1018
Query: 245 GYGRSEGRCCY 213
G G Y
Sbjct: 1019 TLGHVRGPSAY 1029
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 278 SYRSSKWSCNRGYGRSEGRCCYQRTQC 198
+Y S K SC RGY ++ C +C
Sbjct: 805 TYGSYKCSCKRGYAHNDSNVCVDVNEC 831
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Frame = +2
Query: 212 DSSTGLRSCRSPCC---NSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCS 382
D L + R+ C N CS C CTF YS CG+ + C C
Sbjct: 5131 DLERQLNAIRAKGCSVNNKATCS--CPDICTFEYSPLCGSDGKTYDN--QCEMERASCLQ 5186
Query: 383 NPASGSLHSPCSCC--IRCRLPIWSSTSST--FPVWICTSVCSID 505
N C C C P +S ++ PV C S+C+++
Sbjct: 5187 NKDLTGKPGKCDPCEDYTCTSPPYSECTAINGSPVCTCNSICTLE 5231
>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 441 GSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVP 316
G +Q+ QQ+Q E + Q Q ++Q+R P +QQ+ P
Sbjct: 515 GQQQQQQQQQQENNQQYNQGNQQQQQDSQQNRQPGGQQQQQP 556
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 450 DHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 322
D S+Q+ QQ+ + + +Q Q +QH P EQQ+
Sbjct: 662 DQQQSQQQQQQQYDQQSQQQQQQQQQQQQQDQQHYQPSQEQQQ 704
>SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 308 WSSKRCSVGCSYRSSKWSCNRGYGRSE-GRCCYQRTQCPAGDIN 180
W +K+ V S S K C G +S RCC++ QCP G ++
Sbjct: 397 WKTKKNVVPTSECSKK--CPAGTRQSFINRCCWECFQCPEGTVS 438
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 287 VGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSV 168
V Y SS +SCN G GR+ C T P D CS+
Sbjct: 21 VRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSM 60
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCG 319
CC I Y C C FC++ CG
Sbjct: 503 CCGVITGCYFCCCCCFFCFNFCCG 526
>SB_54394| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 245
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 431 CRLPIWSSTSSTFPVWICTSVC 496
C LP +S++SS+ P + T VC
Sbjct: 21 CALPCFSNSSSSLPCYAATEVC 42
>SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8)
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 404 HSPCSCCIRCRLPIWSSTSST 466
+S CCI P+WSS+ ST
Sbjct: 97 YSELPCCISSSTPVWSSSRST 117
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 155 LRYSLSVSHVGWSNQR-SSGYCWNSCDCTRFSSNYKGSSDEYDRF 24
L Y + V V WSN + CW + +C+ Y G + Y +
Sbjct: 254 LTYGVFVCGVTWSNFKIKRNACWENTNCSTTRIRYPGLASFYSPY 298
>SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)
Length = 319
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 275 SCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCCIR 430
SC R T Y NR TSCC + I C+ P +H+ SCC+R
Sbjct: 33 SCCGRQT--YDNRRNTSCCRYTPYNRLKQICCYPNILPRLYGVHT--SCCVR 80
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 27.9 bits (59), Expect = 5.4
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = -1
Query: 344 CRYW--SSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCS 171
C W S C T SK C+ G + +C+ GY +G C Q D+N C+
Sbjct: 85 CSGWAQSGNSCPTPICSKGCAQGVCVKPDNCTCHPGY---DGPSCDQACTLGRWDVN-CN 140
Query: 170 VWRNVLRYSLSVSHVGWSNQRSSGYCWNSCDCTRFSSNYKGSS 42
S S G N +SG+ ++C S Y G+S
Sbjct: 141 NTCECQNNSTCDSVQGICN-CTSGWQGDACQLP-CKSGYYGNS 181
>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
Length = 783
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 278 CTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCCIRCRLPIW 448
CT C CY+++ CS G +LC C A SL CIR +W
Sbjct: 264 CTFLCEACYNDKDVCDQCSEKGYTDWHPLLCPCEVCIADNSL------CIRLVPLVW 314
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 24.6 bits (51), Expect(2) = 5.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 269 SYSCTLRCTFCYSNRCGTSCCSSSGIL 349
+Y C C F C +CC G++
Sbjct: 753 AYVCKEECKFSCDLDCPENCCGPEGLM 779
Score = 21.4 bits (43), Expect(2) = 5.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +2
Query: 242 SPCCNSICCSY 274
+P C+ ICC +
Sbjct: 713 APACSDICCGF 723
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 149 TSEHSSIRCTS*YRQQGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYS-NRCGT 322
T + + CT Y + E + L SC C N CS T +C F Y+ N C T
Sbjct: 314 TCNNGTCICTKQYTGKSCEH-GINLVLSSCVPFCQNGGTCSSPNTCKCPFAYTGNLCQT 371
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 272 YSCTLRCTFCYSNRCGTSCCSSSGILC-CFAILCWCCS 382
YSC C F +C CCS++ C + W C+
Sbjct: 932 YSCPSDCHFSCYPQCTPECCSTTPPTAQCPSSCAWTCA 969
>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 504 SIEQTLVQIHTGNVLEVLDHMGSRQRMQQEQGECREPLAGLEQHQHS 364
S + +LV I T + V+ GSR R + G + + E HQHS
Sbjct: 684 SADDSLVPISTESSFPVVSLTGSRIRNDKYDGTGLKAVLHSEDHQHS 730
>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
Length = 383
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 191 QQGIESFDSSTGLRSCRSPCCNSICCSYSCTL 286
+ G+E D S RSP C I +Y C +
Sbjct: 22 ESGLEHLDKGCRADSLRSPMCAMILLAYHCVI 53
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 507 QSIEQTLVQIHT-GNVLEVLDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLE 331
Q ++Q QI LE H+ +Q+ ++ EPL +QHQ + H P
Sbjct: 189 QQLQQQQQQIELLRRQLEEQQHINQQQQQLLQRAPENEPLVQPQQHQQDPSSFHGTPQGV 248
Query: 330 QQ 325
QQ
Sbjct: 249 QQ 250
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 236 CRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCW 373
C + C+ IC C++ C S +C SC + C A C+
Sbjct: 288 CNALKCHQICVGGGCSMECD-RKSKKCYQSCQGGHCTMKCKAPRCY 332
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -1
Query: 329 SKRCR-TYWSSKRCSVGC--SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLC 174
S RCR S C+ C + S + +C +GY G C +C + N C
Sbjct: 348 SPRCRCANQKSASCNATCINTLGSYRCTCAKGYSLIGGTVCQDIDECLSTSTNKC 402
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 200 IESFDSSTGLRSCRSPCCNSICC-SYSCTLRCTF 298
+ES + GLR SP CC S C L F
Sbjct: 551 VESVEQRKGLRQANSPAYRHTCCLSRGCDLAVRF 584
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -1
Query: 347 GCRYWSSKRCRTYWSSKRCS-VGCSYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCS 171
GCR + S C V C ++ S RG G+ E RC ++CP+G ++C
Sbjct: 720 GCRMAKDLQLIRLGSCDVCHLVSCPVGTTCLS-KRG-GQYECRCPTSSSECPSGGASVCG 777
Query: 170 VWRNVLRYSLSVSHVGWS 117
S HV S
Sbjct: 778 TDGETYENMYSCEHVDCS 795
>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
Length = 270
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 281 TLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPASGSLHSPCSCC 424
TL + C + G +S L C I C P + L +PC CC
Sbjct: 131 TLELSLCNTRSTG----KASPSLSCEVICRICHGGPTTEMLIAPCRCC 174
>SB_55403| Best HMM Match : Homeobox (HMM E-Value=8e-07)
Length = 243
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 459 EVLDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 322
E + +GS +RM E R P G E+ + + RMP + +E
Sbjct: 66 ERMSGIGSEERMSGIGSEERMPGIGSEERMSGIGSEERMPGIGSEE 111
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Frame = +2
Query: 368 CWCCSNPA-SGSLHSPCSCC-----IRC-RLP--IWSSTSSTFPVWIC 484
C CCS P S L C C I+C R+P I+ +++ WIC
Sbjct: 786 CGCCSKPTKSNQLAICCDGCDTWYHIKCLRMPMHIYQGLNNSHTTWIC 833
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 254 CNRGYGRSEGR-CCYQRTQCPAGDIN 180
C GY ++ + CC++ T+CP G I+
Sbjct: 530 CPPGYWQTRMKNCCWECTECPQGTIS 555
>SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)
Length = 784
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 272 RSSKWSCNRGYGRSEGRCCY 213
R + C+ G G++ G+CCY
Sbjct: 402 RKKDYPCDCGSGQNRGKCCY 421
>SB_30581| Best HMM Match : CX (HMM E-Value=0.73)
Length = 198
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +2
Query: 248 CCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCW 373
C N + +S L F S C + ++ + C +++CW
Sbjct: 107 CVNHVSSVHSAFLVRPFANSTSCNSLAFANISSMLCSSLICW 148
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 389 ASGSLHSPCSCCIRCRLPIWSSTSSTFPVWICTS 490
AS ++ CS C C P+ SS T +CTS
Sbjct: 49 ASYAISDCCSACPDCARPVRSSDLDTHKSHMCTS 82
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 149 TSEHSSIRCTS*YRQQGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSC 328
TSE + R+ +E FD T + PC N C +CT C C C
Sbjct: 108 TSEEWELPSQPTLRKLTVEEFDRITAEAENKMPCTN---CGKLGGKKCTACKIPYCSRKC 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,927
Number of Sequences: 59808
Number of extensions: 273659
Number of successful extensions: 1558
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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