Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F09f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 3.3
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 3.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.3
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 3.3
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 22 4.4
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 22 4.4
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 7.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.7
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 21 7.7
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 7.7
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.7
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 3.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 350 CCFAILCWCCSN 385
CC CWCC N
Sbjct: 11 CC----CWCCDN 18
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 3.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 335 WSSKRCRTYWSSKRC 291
W S C YW++K C
Sbjct: 98 WGS--CNNYWNTKNC 110
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 3.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +2
Query: 350 CCFAILCWCCSNPA 391
CC+ +CW + PA
Sbjct: 488 CCWWKICWTITTPA 501
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 3.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +2
Query: 350 CCFAILCWCCSNPA 391
CC+ +CW + PA
Sbjct: 541 CCWWKICWTITTPA 554
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.2 bits (45), Expect = 3.3
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -3
Query: 495 QTLVQIHTGNVL-----EVLDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLE 331
+TL +H+ +L E M ++Q+ QQ+Q + + + + Q +Q + +
Sbjct: 396 RTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455
Query: 330 QQE 322
QQ+
Sbjct: 456 QQQ 458
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 21.8 bits (44), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 98 YCW-NSCDCTRFSSNYKGSSDEYDR 27
+ W N DC+ S YK + D++DR
Sbjct: 114 WSWANYKDCSGIVSAYKIAIDKFDR 138
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.8 bits (44), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 98 YCW-NSCDCTRFSSNYKGSSDEYDR 27
+ W N DC+ S YK + D++DR
Sbjct: 114 WSWANYKDCSGIVSAYKIAIDKFDR 138
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 126 HVGYAQAIPQNIPPYA 173
H+G + PQ IPP A
Sbjct: 152 HIGPSTPFPQFIPPNA 167
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 7.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 302 SKRCSVGCSYRSSKWSCNRGYGRSE 228
S CS S RSS S +R RSE
Sbjct: 18 SNTCSNSQSQRSSGSSISRNSNRSE 42
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 21.0 bits (42), Expect = 7.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 80 DCTRFSSNYKGSSDEYDR 27
DC++ S +K + D++DR
Sbjct: 118 DCSKIVSAFKIAIDKFDR 135
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.0 bits (42), Expect = 7.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 302 SKRCSVGCSYRSSKWSCNRGYGRSE 228
S CS S RSS S +R RSE
Sbjct: 18 SNTCSNSQSQRSSGSSISRNSNRSE 42
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -3
Query: 429 RMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVP 316
+ QQ+Q + ++P +Q Q + + +QQ+ P
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQP 1543
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,807
Number of Sequences: 438
Number of extensions: 2563
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -