Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   189   3e-49
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   189   3e-49
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.42 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.56 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   0.97 
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   6.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.8  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   6.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.0  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  189 bits (460), Expect = 3e-49
 Identities = 84/144 (58%), Positives = 110/144 (76%)
 Frame = +1

Query: 4   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 183
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 184 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 363
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 364 HSLYMKAKGNVFKNKRVLMEYIHR 435
           H+LY++AKGN FK+KR L+E+I R
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQR 144



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 440 KAEKARTKMLSDQAEARRNKVK 505
           KAE  RTK++ +Q +ARR + K
Sbjct: 146 KAEANRTKLIQEQQDARRARAK 167


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  189 bits (460), Expect = 3e-49
 Identities = 84/144 (58%), Positives = 110/144 (76%)
 Frame = +1

Query: 4   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 183
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 184 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 363
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 364 HSLYMKAKGNVFKNKRVLMEYIHR 435
           H+LY++AKGN FK+KR L+E+I R
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQR 144



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 440 KAEKARTKMLSDQAEARRNKVK 505
           KAE  RTK++ +Q +ARR + K
Sbjct: 146 KAEANRTKLIQEQQDARRARAK 167


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 147 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 58
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 126 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 31
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 182 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 280
           ++V  K  K  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +1

Query: 64  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 210
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 211 RRKGR 225
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 118 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 234
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 328 TSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHS 227
           +SG + LKP   +   P   +  W+  F  +SHS
Sbjct: 193 SSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHS 226


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 259 WLYLFSYQSHSDDPFYVLLCFCGHERGS 176
           W     Y+S   D FY ++ F  H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 7   SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 132
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 273 WHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILD 136
           ++  + C S  T   +    TC     +TSA +Y  RF+ D+   D
Sbjct: 297 YYAVVECDSVRTAKVI--YETCDGAEYETSANIYDLRFIPDDVTFD 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,350
Number of Sequences: 5004
Number of extensions: 45167
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)