Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 197 3e-51
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 194 2e-50
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 193 7e-50
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 43 1e-04
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.3
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 4.4
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 4.4
At1g16850.1 68414.m02033 expressed protein 28 4.4
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 5.8
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 5.8
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 5.8
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 7.7
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 197 bits (481), Expect = 3e-51
Identities = 89/153 (58%), Positives = 112/153 (73%)
Frame = +1
Query: 4 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 183
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 184 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 363
+R R EA+RKGRH G+GKR+GT AR+P K LW +KKIDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 364 HSLYMKAKGNVFKNKRVLMEYIHRXEG*EGQDE 462
H +YMK KGNVFKNKRVLME IH+ + + +++
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREK 153
Score = 30.3 bits (65), Expect = 0.82
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 440 KAEKARTKMLSDQAEARRNKVK 505
KAEKAR K L+DQ EA+R K K
Sbjct: 146 KAEKAREKTLADQFEAKRIKNK 167
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 194 bits (474), Expect = 2e-50
Identities = 87/153 (56%), Positives = 113/153 (73%)
Frame = +1
Query: 4 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 183
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 184 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 363
+R R+ A+RKGRH G+GKR+GT AR+P K LW KKIDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 364 HSLYMKAKGNVFKNKRVLMEYIHRXEG*EGQDE 462
H +YMK KGNVFKNKRVLME IH+ + + +++
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK 153
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +2
Query: 440 KAEKARTKMLSDQAEARRNKVK 505
KAEKAR K LSDQ EA+R K K
Sbjct: 146 KAEKAREKTLSDQFEAKRAKNK 167
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 193 bits (470), Expect = 7e-50
Identities = 87/153 (56%), Positives = 111/153 (72%)
Frame = +1
Query: 4 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 183
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 184 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 363
+R RK A+ KGRH G+GKR+GT AR+P K LW KKID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 364 HSLYMKAKGNVFKNKRVLMEYIHRXEG*EGQDE 462
H +YM+ KGNVFKNKRVLME IH+ + + +++
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREK 153
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +2
Query: 440 KAEKARTKMLSDQAEARRNKVK 505
KAEKAR K LSDQ EA+R K K
Sbjct: 146 KAEKAREKTLSDQFEAKRAKNK 167
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/33 (57%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = +1
Query: 340 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHR 435
KKID+ +Y H ++MK KG V+KNK VLME +H+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHK 61
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 142 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 261
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 164 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 69
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 80 GSNHTFFLPHRITEAASLFCSLRELI 3
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At1g16850.1 68414.m02033 expressed protein
Length = 152
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 422 STSTGKKAEKARTKMLSDQAEARRNKVKRHAS 517
S +T ++A ++ +++SD AEA + KVKR S
Sbjct: 108 SKATVEEAARSAAEVVSDTAEAVKEKVKRSVS 139
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 178 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 285
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 337 AKKIDRHLYHSLYMKAKGNVFKNKRVL 417
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 142 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 255
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 329 YFRSNFLKTLCLCTHSSFCGIRALAVPLLLPKPQ*RPFLRASVFLRTRAREC 174
Y N KTLC S G+RA A + L Q R RA++ ++++ R C
Sbjct: 796 YICQNAYKTLCSSACSIQTGMRAKAARIEL---QLRKKRRATIIIQSQIRRC 844
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,001
Number of Sequences: 28952
Number of extensions: 246439
Number of successful extensions: 649
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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