Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.31 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 167 ENRNGD-LVTGSYSVVD-PDGTRRIVDYTAD 253
           E R  D  + G Y VV   DG+ R V YTAD
Sbjct: 208 EERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 191 TGSYSVVDPDGTRRIVDYTADPLNGFNA 274
           +GSY    P+G     D +   LNG++A
Sbjct: 141 SGSYDPYSPNGKIGREDLSPSSLNGYSA 168


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 101 LPQYSYGYDVQDTLTGDFKGHQ 166
           LP  + G  V     GDF+G+Q
Sbjct: 581 LPMLAPGAPVMTRYLGDFEGNQ 602


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 43  SRRGKCKCYRTCT 81
           S   KC C RTC+
Sbjct: 185 SNGNKCCCLRTCS 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,073
Number of Sequences: 336
Number of extensions: 1799
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)