Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   3.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   3.9  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   3.9  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 224 CHQGRQPNKIQSRDRHSCFLDVL*NLQ*EYPERHIRR 114
           C + RQ  KI+    H CF  V  N Q  YPE  IRR
Sbjct: 19  CQRCRQ-RKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 214 VDNRIRSSHEIAIPVFLMSFEISSESILNVISVGVLREGI 95
           +D  +  S  ++ P F+  + I++ S+   +SVG+  E I
Sbjct: 113 IDFLVTISEPVSRPAFIHEYRITAYSLYAAVSVGLKTEDI 152


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 223 AIRVDNRIRSSHEIAIPVFLMSFEISSESI 134
           AIR  N+ R  HE  I +F  SF+I+  ++
Sbjct: 11  AIRHANQRRWCHECTIKIFRRSFDIARHTV 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,191
Number of Sequences: 5004
Number of extensions: 28480
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)