Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532...    28   4.0  
04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749     28   5.2  
01_06_0219 + 27649784-27650959                                         28   5.2  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    27   6.9  
08_02_0482 - 17643603-17643955,17644024-17646604                       27   9.1  
01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972           27   9.1  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    27   9.1  

>01_07_0351 +
           42952504-42952692,42952824-42952910,42953039-42953257,
           42953329-42953502,42954799-42954852,42954983-42955123,
           42955599-42955637,42956689-42957045
          Length = 419

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 PQYSYGYDVQDTLTGDFKGHQENRNGDLVTGSY 202
           PQY Y Y V   L GD + HQ  R  DL  G++
Sbjct: 278 PQYEYDYLVWKVLAGDRRHHQ--RPKDLAGGNW 308


>04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749
          Length = 442

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 PCPLWWPRRACSRQLPLW 397
           P PLWW   AC+ ++  W
Sbjct: 170 PFPLWWSAAACALEMASW 187


>01_06_0219 + 27649784-27650959
          Length = 391

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 212 DPDGTRRIVDYTADPLNGFNAVVRREPLVVAAP 310
           +PD  + I+ Y+ +   GF+ +  RE ++V AP
Sbjct: 192 EPDVIQDIIYYSGEEKQGFHVLTNREEVLVFAP 224


>02_01_0598 +
           4440018-4440070,4440627-4440693,4440794-4440926,
           4441075-4441120,4442470-4442521,4442601-4442753,
           4443338-4443457,4443549-4443714,4443822-4443934,
           4444049-4444120,4444992-4445213,4445270-4445317,
           4445639-4445697,4445809-4445887,4445982-4446119,
           4446327-4446551,4446643-4447430,4447548-4447723,
           4447911-4448169,4448646-4448707,4451055-4451212,
           4451618-4451743,4452197-4452260,4452386-4452494,
           4452607-4452760,4453055-4453178,4453257-4453333,
           4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 253 VSCIIHDPPSAIRVDNRIRSSHEIAIPVFLMSFEISSESILNVISVGVLREGI 95
           VS I+H+  + ++  +  R+  E A+P  + SF     SI   I+   L+E +
Sbjct: 533 VSDILHNSSAPVKNASAFRTKFEAALPDVIESFNDLYRSITGRITAEALKERV 585


>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 110  YSYGYDVQDTLTGDFKGHQENRNGDLVTGSYSVVDPDGTRRIVD 241
            YS+G  + + LTG      E    DLV      V+ DG  R++D
Sbjct: 875  YSFGVVMLELLTGKAPAGPELGEKDLVRWVCGCVERDGVDRVLD 918


>01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972
          Length = 82

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 58  CKCYRTCTCRPC 93
           CKC   CTC PC
Sbjct: 67  CKCGDNCTCNPC 78


>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 58   CKCYRTCTCRPC 93
            CKC   CTC PC
Sbjct: 1149 CKCGDNCTCNPC 1160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,523
Number of Sequences: 37544
Number of extensions: 216158
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)