BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS305F07f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532... 28 4.0 04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749 28 5.2 01_06_0219 + 27649784-27650959 28 5.2 02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 27 6.9 08_02_0482 - 17643603-17643955,17644024-17646604 27 9.1 01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972 27 9.1 01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 27 9.1 >01_07_0351 + 42952504-42952692,42952824-42952910,42953039-42953257, 42953329-42953502,42954799-42954852,42954983-42955123, 42955599-42955637,42956689-42957045 Length = 419 Score = 28.3 bits (60), Expect = 4.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +2 Query: 104 PQYSYGYDVQDTLTGDFKGHQENRNGDLVTGSY 202 PQY Y Y V L GD + HQ R DL G++ Sbjct: 278 PQYEYDYLVWKVLAGDRRHHQ--RPKDLAGGNW 308 >04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749 Length = 442 Score = 27.9 bits (59), Expect = 5.2 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = +2 Query: 344 PCPLWWPRRACSRQLPLW 397 P PLWW AC+ ++ W Sbjct: 170 PFPLWWSAAACALEMASW 187 >01_06_0219 + 27649784-27650959 Length = 391 Score = 27.9 bits (59), Expect = 5.2 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 212 DPDGTRRIVDYTADPLNGFNAVVRREPLVVAAP 310 +PD + I+ Y+ + GF+ + RE ++V AP Sbjct: 192 EPDVIQDIIYYSGEEKQGFHVLTNREEVLVFAP 224 >02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926, 4441075-4441120,4442470-4442521,4442601-4442753, 4443338-4443457,4443549-4443714,4443822-4443934, 4444049-4444120,4444992-4445213,4445270-4445317, 4445639-4445697,4445809-4445887,4445982-4446119, 4446327-4446551,4446643-4447430,4447548-4447723, 4447911-4448169,4448646-4448707,4451055-4451212, 4451618-4451743,4452197-4452260,4452386-4452494, 4452607-4452760,4453055-4453178,4453257-4453333, 4453442-4453494,4453673-4453727,4453833-4454021 Length = 1379 Score = 27.5 bits (58), Expect = 6.9 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = -2 Query: 253 VSCIIHDPPSAIRVDNRIRSSHEIAIPVFLMSFEISSESILNVISVGVLREGI 95 VS I+H+ + ++ + R+ E A+P + SF SI I+ L+E + Sbjct: 533 VSDILHNSSAPVKNASAFRTKFEAALPDVIESFNDLYRSITGRITAEALKERV 585 >08_02_0482 - 17643603-17643955,17644024-17646604 Length = 977 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 110 YSYGYDVQDTLTGDFKGHQENRNGDLVTGSYSVVDPDGTRRIVD 241 YS+G + + LTG E DLV V+ DG R++D Sbjct: 875 YSFGVVMLELLTGKAPAGPELGEKDLVRWVCGCVERDGVDRVLD 918 >01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972 Length = 82 Score = 27.1 bits (57), Expect = 9.1 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +1 Query: 58 CKCYRTCTCRPC 93 CKC CTC PC Sbjct: 67 CKCGDNCTCNPC 78 >01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895, 2668344-2668410,2668473-2668562,2668672-2668787, 2668999-2671924 Length = 1170 Score = 27.1 bits (57), Expect = 9.1 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +1 Query: 58 CKCYRTCTCRPC 93 CKC CTC PC Sbjct: 1149 CKCGDNCTCNPC 1160 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,921,523 Number of Sequences: 37544 Number of extensions: 216158 Number of successful extensions: 486 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 486 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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