Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)          27   7.1  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     27   7.1  
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    27   9.4  

>SB_48018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 125 DVQDTLTGDFKGHQENRNGDLVTGSYSVVDPDGTRRIVDYTADPLNGFNAVVR 283
           DV+D + G  + H+E  NGD  T   ++ + +   ++ D    PL+G   ++R
Sbjct: 53  DVRDKI-GILQHHREAENGDEYTDVKAMFEFEIENKLTDAKTQPLSGSRTLLR 104


>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
          Length = 802

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 109 VLLRI*RSGYSHWRFQRTSRKQEWRSRDWILFGCRP*WH*EDRGL 243
           VL R+ +SG   WR +RT +   W + +W LFG    W  ++R L
Sbjct: 457 VLGRLRKSG---WRPRRTIKFCSWGAEEWGLFGSTE-WVEQNRNL 497


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119  GYDVQDTLTGDFKGHQENRNGDLVTGSYSVVDPDGTR--RIVDYTADPLNGFNAVVR 283
            G   Q+   G + G  + R+    + +YS V PDG R  R+ + TA+P   ++  V+
Sbjct: 848  GIASQEIAVGTYPGGDDIRSFKDQSLTYSAVLPDGKRYARVTNITAEPGVRYHVTVK 904


>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 129 FRILSLEISKDIKKTGMAI 185
           FRI+ +E+ +D+KKT M +
Sbjct: 686 FRIIKIEVKEDVKKTTMEV 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,029
Number of Sequences: 59808
Number of extensions: 240789
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)