Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    32   0.20 
At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative...    29   2.5  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    28   3.3  

>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 307 SGYHQGLAADYRVESI*GVSCIIHDPPSAIRVDNRIRSSHEIAIPVFLMSFEISSESIL 131
           SG+  GL A  + E +  +SC+    P A  V N  + S  I++ +F    E+++  +L
Sbjct: 152 SGFRFGLEAGSKPEILLAMSCLCKGNPEAFLVCNGFKDSEYISLALFGRKLELNTVIVL 210


>At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative
           similar to probable NADP-dependent oxidoreductase
           (zeta-crystallin homolog)  P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816
          Length = 350

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 116 YGYDVQDTLTGDFKGHQENRNGDLVTG-----SYSVVDPDGTRRIVDYTADPLNGFNAVV 280
           YG+ V   +     GH + + GDL+ G      YS++ PD +   + +T  PL+ +  ++
Sbjct: 85  YGFSVSKVIDS---GHPDYKKGDLLWGLVGWGEYSLITPDFSHYKIQHTDVPLSYYTGLL 141


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 161 HQENRNGDLVTGSYS----VVDPDGTRRIVDYTADPLNGFNAVVR 283
           H  NR      GS S    VVDPD T  I D T+ PL+   A VR
Sbjct: 439 HFRNRTNKWEDGSVSEISGVVDPDRTSFISDGTSTPLSTARAHVR 483


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,158,457
Number of Sequences: 28952
Number of extensions: 158628
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)