Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F06f
         (432 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W2J4 Cluster: CG4302-PA; n=7; Sophophora|Rep: CG4302-...    36   0.36 
UniRef50_Q9VJ47 Cluster: CG17324-PA; n=2; Sophophora|Rep: CG1732...    33   1.9  

>UniRef50_Q9W2J4 Cluster: CG4302-PA; n=7; Sophophora|Rep: CG4302-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 532

 Score = 35.9 bits (79), Expect = 0.36
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 129 KYDAXXTESFFNXAXAGYGGVLQVPWILLSSVSIMPHLEXIIXXVPPXKLISH 287
           KYD    E FFN      G + Q+P I +S+     HL  +   V P   + H
Sbjct: 141 KYDLLLAEQFFNEGALILGHLYQIPTITISTFGNANHLSQLFGVVSPWSYVPH 193


>UniRef50_Q9VJ47 Cluster: CG17324-PA; n=2; Sophophora|Rep:
           CG17324-PA - Drosophila melanogaster (Fruit fly)
          Length = 525

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  RLSLSVPXLXQAFVSX-KYDAXXTESFFNXAXAGYGGVLQVPWILLSSVSIMP 236
           +++L+ P + Q   S  +YD    E F N   A    +L  P I LSS +IMP
Sbjct: 115 KVALNSPLITQLLKSPIRYDVILLEHFSNDCMAAVAHLLNAPVIALSSCAIMP 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,953,015
Number of Sequences: 1657284
Number of extensions: 4321692
Number of successful extensions: 7779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7779
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)