Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F06f
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0522 - 25161595-25162285,25162394-25163139                       27   6.5  
06_02_0347 - 14926801-14926821,14927615-14928529,14928530-149286...    27   8.6  

>03_05_0522 - 25161595-25162285,25162394-25163139
          Length = 478

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 320 GSFXFDGDLHVMRYQLXRRHXXDDGFQVRHY 228
           G+F + G L+V  Y L R    D  +QV HY
Sbjct: 232 GNFYWRGALYVNSYFLMRISISDGSYQVIHY 262


>06_02_0347 -
           14926801-14926821,14927615-14928529,14928530-14928634,
           14928698-14929003
          Length = 448

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 344 QAXRAQMVGSFXFDGDLHVMRYQLXRRHXXDDGFQVRH 231
           +A R  + G   +DGD H++      RH    G++ RH
Sbjct: 55  RARRVPIGGGGDYDGDDHMLSDMDDHRHGGHHGYRDRH 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,869
Number of Sequences: 37544
Number of extensions: 127812
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)