Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F06f
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    27   5.5  
At3g14020.1 68416.m01770 CCAAT-binding transcription factor (CBF...    27   7.2  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    26   9.6  
At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containi...    26   9.6  

>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 146 HGVLLQXCXGGLRRSTSSALDPV-VQRLHNASL 241
           +G+LL  C GGL +  S+  D V V RL N +L
Sbjct: 92  NGILLVSCNGGLNQMRSAICDMVTVARLLNLTL 124


>At3g14020.1 68416.m01770 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 308

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 248 GFQVRHYGDAGQQDPGHLKYSSVTRL 171
           GFQ++HY  +  Q  G   YS V  L
Sbjct: 50  GFQMQHYDSSSTQSTGGESYSEVASL 75


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 180 YGGVLQVPWILLSSVSIMPHLEXIIXXV 263
           Y  +L + W+ L+++  MPH+E ++  V
Sbjct: 701 YFDMLVISWVPLNALWFMPHVEFVLIMV 728


>At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 745

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 188 SSVTRLGXVEEGLRXXRVVFXADERLXQ 105
           S+ +  G VEEGLR  R +F   E L Q
Sbjct: 475 SACSHAGRVEEGLRIFRSMFEKPETLPQ 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,103
Number of Sequences: 28952
Number of extensions: 90194
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)