Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   1e-32
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              110   8e-25
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   3e-24
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   1e-23
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         42   2e-04
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         40   0.001
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         35   0.035
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.047
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.062
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.33 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   7.1  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         27   7.1  
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  136 bits (329), Expect = 1e-32
 Identities = 68/126 (53%), Positives = 79/126 (62%)
 Frame = +3

Query: 144 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 323
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 324 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 503
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 504 KDTNGS 521
           K+TNGS
Sbjct: 127 KNTNGS 132


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  110 bits (264), Expect = 8e-25
 Identities = 56/110 (50%), Positives = 68/110 (61%)
 Frame = +3

Query: 192 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 371
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 372 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGS
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGS 243


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  108 bits (259), Expect = 3e-24
 Identities = 66/144 (45%), Positives = 83/144 (57%), Gaps = 18/144 (12%)
 Frame = +3

Query: 144 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 284
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 285 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 449
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 450 NFKLKHYGAGWLSMANAGKDTNGS 521
           NFKL+HYGAGWLSMANAGKDTNGS
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGS 151


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  106 bits (255), Expect = 1e-23
 Identities = 58/111 (52%), Positives = 65/111 (58%)
 Frame = +3

Query: 189 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 368
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 369 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGS
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGS 109


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 420 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
           S+YG  FEDE+F + H   G + MAN G+ TNGS
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGS 84


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = +3

Query: 420 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
           SIYG  F DE F+ KH     LSMAN G +TNGS
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGS 64


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 420 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGS 521
           SI+G  FEDE  + L+H     +SMANAG +TNGS
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGS 42


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 237 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 365
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +3

Query: 237 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 380
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +3

Query: 243 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 356
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 199 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 98
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 199 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 98
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 462 KHYGAGWLSMANAGKDTNGS 521
           +H   G LSMAN+G +TNGS
Sbjct: 188 EHDKPGLLSMANSGPNTNGS 207


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 489 MANAGKDTNGS 521
           MANAGKDTNGS
Sbjct: 1   MANAGKDTNGS 11


>SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 224 LHVKAHLMSNFRSFGNFIRFGTSDEQQN 141
           LH K   M+N  ++G F+  GT+D +QN
Sbjct: 68  LH-KTSGMTNRNAYGTFLTLGTTDNKQN 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,487
Number of Sequences: 59808
Number of extensions: 268086
Number of successful extensions: 429
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)