Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 132 1e-31
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 130 7e-31
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 128 3e-30
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 122 2e-28
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 118 2e-27
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 102 1e-22
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 101 4e-22
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 100 7e-22
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 100 1e-21
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 99 2e-21
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 99 2e-21
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 99 2e-21
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 98 4e-21
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 95 3e-20
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 93 8e-20
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 74 5e-14
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 68 4e-12
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 67 8e-12
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 67 8e-12
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 59 2e-09
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 50 9e-07
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 46 2e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 2e-04
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 40 8e-04
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 38 0.003
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 38 0.003
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 38 0.003
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 36 0.012
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 30 0.82
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH... 29 1.9
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i... 29 1.9
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i... 29 1.9
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 27 5.8
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 27 5.8
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 27 5.8
At4g23160.1 68417.m03342 protein kinase family protein contains ... 27 7.7
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 27 7.7
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 132 bits (320), Expect = 1e-31
Identities = 75/149 (50%), Positives = 94/149 (63%), Gaps = 7/149 (4%)
Frame = +3
Query: 96 TKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 275
+ + L++ +L + LG L I + KS E K ++THKV FD++I G IV+GLFGKT
Sbjct: 3 SSVTLLLWSLLL-LGTLSAIQAKKSKENLK--EITHKVYFDVEIDGKAAGRIVMGLFGKT 59
Query: 276 VPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGE 434
VPKT ENF L +G G YKGS FHR+I +FM+Q SIYGE
Sbjct: 60 VPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGE 119
Query: 435 RFEDENFKLKHYGAGWLSMANAGKDTNGS 521
+F DENFKLKH G G+LSMANAG+DTNGS
Sbjct: 120 KFADENFKLKHTGPGFLSMANAGQDTNGS 148
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 130 bits (313), Expect = 7e-31
Identities = 66/123 (53%), Positives = 81/123 (65%)
Frame = +3
Query: 153 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 332
+A+ + + I KVT+KV FD++IG + G IV+GLFG+ VPKT ENF L + G
Sbjct: 79 MAAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG 138
Query: 333 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDT 512
YKGS FHR+IK+FMIQ SIYG +FEDENF LKH G G LSMANAG +T
Sbjct: 139 YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNT 198
Query: 513 NGS 521
NGS
Sbjct: 199 NGS 201
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 128 bits (308), Expect = 3e-30
Identities = 70/130 (53%), Positives = 84/130 (64%), Gaps = 7/130 (5%)
Frame = +3
Query: 153 IASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG 332
IAS ++ E K +VTHKV FD++I + G +VIGLFGK VPKT ENF L +G G
Sbjct: 18 IASIQAKEDLK--EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVG 75
Query: 333 -------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSM 491
YKGSKFHR+I +FMIQ SIYG++F DENFKLKH G G LSM
Sbjct: 76 KSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSM 135
Query: 492 ANAGKDTNGS 521
AN+G+DTNGS
Sbjct: 136 ANSGEDTNGS 145
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 122 bits (293), Expect = 2e-28
Identities = 61/113 (53%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Frame = +3
Query: 192 KVTHKVSFDMKIGDDN---IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 362
K+THKV FD+ +G+ G IVIGL+G VP+T ENF L +G GYKGS FHRVI
Sbjct: 87 KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVI 146
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
++FMIQ +S+YG F+DENFKL H G G LSMANAG +TNGS
Sbjct: 147 RDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGS 199
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 118 bits (285), Expect = 2e-27
Identities = 64/131 (48%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Frame = +3
Query: 153 IASAKSDEIPKGPK-VTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGE 329
I AK +++ + + VTHKV FD++I G I+IGLFG VPKT ENF L +G
Sbjct: 42 ILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGV 101
Query: 330 G-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLS 488
G +KGS FHR+I FMIQ SIYG++F DENFKLKH G G+LS
Sbjct: 102 GNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGFLS 161
Query: 489 MANAGKDTNGS 521
MAN+G D+NGS
Sbjct: 162 MANSGPDSNGS 172
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 102 bits (245), Expect = 1e-22
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Frame = +3
Query: 99 KLVLIMGTLTMALGILLFIASAKSD-EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKT 275
+ +L++ LT+ L LF + ++ + ++T++V D+ I +G IVIGL+G
Sbjct: 12 RCLLLLVALTIFLVFALFNTGKDEEKQVIEDHEITNRVFLDVDIDGQRLGRIVIGLYGTV 71
Query: 276 VPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGE 434
VPKT ENF L +G+ YKG+ FHR+I F+IQ SIYG
Sbjct: 72 VPKTVENFRALCTGEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKSSDSIYGG 131
Query: 435 RFEDENFKLKHYGAGWLSMANAGKDTNGS 521
F DENFK++H AG ++MAN G D+NGS
Sbjct: 132 TFPDENFKIQHSHAGMVAMANTGPDSNGS 160
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 101 bits (241), Expect = 4e-22
Identities = 57/113 (50%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
KV FDM IG G IV+ L+ PKT ENF L +G G +KGS FHRVI
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
NFM Q SIYG +FEDENF+ KH G G LSMANAG +TNGS
Sbjct: 66 PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGS 118
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 100 bits (239), Expect = 7e-22
Identities = 56/113 (49%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
KV FDM I G IV+ L+ P+T ENF L +G G +KGSKFHRVI
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
NFM Q SIYG +FEDENF+ KH G G LSMANAG +TNGS
Sbjct: 65 PNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGS 117
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 99.5 bits (237), Expect = 1e-21
Identities = 55/113 (48%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
KV FDM +G + G IV+ L+ T P+T ENF L G G YKGS FHRVI
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVI 65
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FM Q SIYG +F+DENF KH G G LSMANAG +TNGS
Sbjct: 66 PKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGS 118
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 99.1 bits (236), Expect = 2e-21
Identities = 57/118 (48%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = +3
Query: 192 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 347
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 348 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FHRVIK FM Q SIYG +F DENF+L H GAG LSMAN G +TNGS
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENFRLDHDGAGVLSMANCGPNTNGS 121
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 99.1 bits (236), Expect = 2e-21
Identities = 57/118 (48%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = +3
Query: 192 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 347
K V D+ IG D + IVI LF VPKT ENF L G G +KGS
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSS 63
Query: 348 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FHRVIK FM Q SIYG +F DENF+L H GAG LSMAN G +TNGS
Sbjct: 64 FHRVIKGFMAQGGDFSNGNGTGGESIYGGKFSDENFRLDHDGAGVLSMANCGPNTNGS 121
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 99.1 bits (236), Expect = 2e-21
Identities = 54/113 (47%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
KV FD+ IG G +V+ LF P+T NF L G G YKGS FHR+I
Sbjct: 5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRII 64
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FM Q SIYG +FEDENFKLKH G G LSMAN+G +TNGS
Sbjct: 65 PGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGS 117
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 97.9 bits (233), Expect = 4e-21
Identities = 55/114 (48%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRV 359
K D+ IG + G IVI L+ VPKT ENF L +G G YKG++FHRV
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRV 64
Query: 360 IKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
IK FMIQ SIYG +F+DENF+LKH G LSMAN+G +TNGS
Sbjct: 65 IKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGS 118
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 95.1 bits (226), Expect = 3e-20
Identities = 55/118 (46%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Frame = +3
Query: 180 PKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGS 344
P PK V FD+ IG G I + LF PKT ENF Q + G+ GYK
Sbjct: 26 PPNPK-NPVVFFDVSIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKEC 84
Query: 345 KFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 518
+FHRVIK+FM+Q SIYG +FEDENF KH G G LSMAN+G +TNG
Sbjct: 85 QFHRVIKDFMVQSGDFLKNDGSGCMSIYGHKFEDENFTAKHTGPGLLSMANSGPNTNG 142
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 93.5 bits (222), Expect = 8e-20
Identities = 53/113 (46%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
+V FDM + IG I + LF T P T ENF L +G G +KGS FHRVI
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 64
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FM Q SIYG +F+DENF KH GAG LSMAN+G +TNGS
Sbjct: 65 PGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGS 117
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 74.1 bits (174), Expect = 5e-14
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 231 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 410
+ ++G + ++ K P+T NF +L+++ Y FHR++K+F++Q
Sbjct: 15 ETSMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQGGDPTGTGRG 71
Query: 411 XXRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGS 521
SIYG +FEDE N +LKH GAG LSMANAG +TNGS
Sbjct: 72 G-ESIYGSKFEDEINKELKHTGAGILSMANAGPNTNGS 108
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 67.7 bits (158), Expect = 4e-12
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Frame = +3
Query: 192 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSK 347
K +V D+ I D T+V LF + PKT+ENF L +G G YKGS
Sbjct: 4 KKNPQVFMDVSIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSF 63
Query: 348 FHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGS 521
FHR++K Q SIY +F DE+ KL+H G LSM+ A +D GS
Sbjct: 64 FHRIMKGSSAQAGDFVNRNGTAGESIYAGKFPDESPKLRHEETGLLSMSIADRDKFGS 121
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 66.9 bits (156), Expect = 8e-12
Identities = 47/117 (40%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 174 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFH 353
++ K PK V F GD NI L P+ ENF L ++ Y G FH
Sbjct: 335 KVEKNPKKKGYVQFQTTHGDLNIE-----LHCDIAPRACENFITLCERGY---YNGVAFH 386
Query: 354 RVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGS 521
R I+NFMIQ SI+G+ F+DE N KL H G G +SMAN+G TNGS
Sbjct: 387 RSIRNFMIQGGDPTGTGKGG-ESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGS 442
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 66.9 bits (156), Expect = 8e-12
Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 237 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 416
N+G I +F VPK+ ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQGGDPKGTGKGGT 64
Query: 417 RSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGS 521
SI+G++F DE LKH G LSMAN+G +TNGS
Sbjct: 65 -SIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNGS 99
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/95 (42%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +3
Query: 240 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXR 419
+G I + L+ + PKT ENF + Y FHRVI+ FMIQ +
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQTGDPLGDGTGG-Q 539
Query: 420 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGS 521
SI+G FEDE K L+H LSMANAG +TNGS
Sbjct: 540 SIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGS 574
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 50.0 bits (114), Expect = 9e-07
Identities = 40/114 (35%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Frame = +3
Query: 204 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVI 362
KV FD+ + G IVI LF P+T ENF L G G YKGS F ++
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIV 64
Query: 363 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHY-GAGWLSMANAGKDTNGS 521
+ M I+ E +DE F L H G G +SMA D+NGS
Sbjct: 65 PDLM----WCGGDIIFENEPIHSEELDDEYFILNHEDGPGIISMA----DSNGS 110
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 243 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQXXXXXXXXXXXXR 419
G I + L+ K PK+ NF QL EGY + FHRVI F++Q
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQGGDPTGSGTGGD- 76
Query: 420 SIYGERFEDE-NFKLKHYGAGWLSMANAGK-DTNGS 521
SIYG F DE + +L+ G ++MANA ++NGS
Sbjct: 77 SIYGGVFADEFHSRLRFSHRGIVAMANASSPNSNGS 112
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Frame = +3
Query: 237 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ---XXXXXXXXX 407
++G IVI L P T +NF +L + + Y G FH V K+F Q
Sbjct: 8 SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQTGDPTGTGAGGD 64
Query: 408 XXXRSIYGER---FEDE-NFKLKHYGAGWLSMANAGKDTNGS 521
+ +YGE+ ++DE + LKH G ++MA+ G++ N S
Sbjct: 65 SIYKFLYGEQARFYKDEIHLDLKHSKTGTVAMASGGENLNAS 106
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Frame = +3
Query: 93 RTKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTH--------KVSFDMKIGDDNIGT 248
++ L+L++ T T L LL + A++D I P +T+ K D+ I + IG
Sbjct: 50 KSSLLLLLTTQT-TLTPLLDFSKAQADTIAN-PNLTNCENRIPTKKAFIDVSIDGEPIGR 107
Query: 249 IVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 374
I+IGL+G VP T F + G Y+ F +++ ++
Sbjct: 108 IIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 243 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 380
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 243 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 380
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 243 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 380
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 231 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 380
D G++ I LF T P + F + Q +GY KG F RV+K+F+IQ
Sbjct: 83 DTGKGSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 240 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 359
+G +V+GL+G+ VP T F ++ YK + H++
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123
>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
(CHX25) similar to Na+/H+-exchanging protein slr1595,
Synechocystis sp., PIR:S74951; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 857
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -2
Query: 283 LGTVFPNNP-ITIVPILSSPIFMSKLTL*VTLGPLGISSDLALAMNNKIPKAIVRVPMIK 107
LG V P+ P + + S F+++ + + +G +++ L PK I P+I
Sbjct: 329 LGLVVPHGPPLGSTLAIRSETFVNEFLMPFSFALVGQKTNVNLISKETWPKQIS--PLIY 386
Query: 106 TSLVRFLAIFTKFVSNVYFFKI 41
S+V F+ F FFK+
Sbjct: 387 MSIVGFVTKFVSSTGAALFFKV 408
>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 680
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 111 IMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTT 290
++ + L +LLFIA + K K T + ++GDD + L +T+ T
Sbjct: 289 VLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTASASEVGDDMATADSLQLDYRTIQTAT 348
Query: 291 ENFFQ---LAQKPEGEGYKGS 344
+F + + + GE YKG+
Sbjct: 349 NDFAESNKIGRGGFGEVYKGT 369
>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 674
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 111 IMGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTT 290
++ + L +LLFIA + K K T + ++GDD + L +T+ T
Sbjct: 289 VLVVAVVVLAVLLFIALVGYCFLAKKKKKTFDTASASEVGDDMATADSLQLDYRTIQTAT 348
Query: 291 ENFFQ---LAQKPEGEGYKGS 344
+F + + + GE YKG+
Sbjct: 349 NDFAESNKIGRGGFGEVYKGT 369
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 171 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 347
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 348 FHRV 359
F R+
Sbjct: 429 FPRI 432
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 171 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 347
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 348 FHRV 359
F R+
Sbjct: 429 FPRI 432
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 171 DEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF-GKTVPKTTENFFQLAQKPEGEGYKGSK 347
+++P H + D +G N I L K VP++ F L PEG K
Sbjct: 369 EKLPSDISERHVLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKK 428
Query: 348 FHRV 359
F R+
Sbjct: 429 FPRI 432
>At4g23160.1 68417.m03342 protein kinase family protein contains Pfam
domain PF00069: Protein kinase domain
Length = 1262
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 129 MALGILLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQ- 305
+ L +LLFIA + + K T + ++GDD + L +T+ T +F +
Sbjct: 883 VVLAVLLFIALVGYCFLAQRTKKTFDTASASEVGDDMATADSLQLDYRTIQTATNDFAES 942
Query: 306 --LAQKPEGEGYKGS 344
+ + GE YKG+
Sbjct: 943 NKIGRGGFGEVYKGT 957
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 145 KIPKAIVRVPMIKTSLVRFLAIFTKFVSNVYFFKI 41
K+ ++ +R+P IKT++ ++ F +S Y K+
Sbjct: 399 KLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKL 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,572,600
Number of Sequences: 28952
Number of extensions: 203241
Number of successful extensions: 488
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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