Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F03f
(521 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 36 3e-04
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 26 0.23
AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein. 25 0.41
EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine vasopre... 23 2.2
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 22 3.8
AM712903-1|CAN84642.1| 148|Tribolium castaneum hypothetical pro... 21 5.0
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 21 6.6
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 21 6.6
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 21 8.7
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 35.5 bits (78), Expect = 3e-04
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 516 CTNGXC--VAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNVCL 382
C NG C + +C C+DG+S C++ C++ C CL
Sbjct: 156 CNNGTCEDIGNSHRCHCSDGYS--GSYCQTEINECDSAPCQNGGTCL 200
Score = 31.1 bits (67), Expect = 0.006
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = -3
Query: 501 CVAPPEKC---SCNDGFSLIDGECRSVCRNCENGVCS---KDNVCLCNESFEMHNGTCRR 340
C E C SC +G + IDG +C C+ G ++ + LC+ S ++ TC+
Sbjct: 20 CQTNDEDCTETSCMNGGTCIDGINSYIC-TCKPGFTGSNCQNRINLCDSSPCLNGATCQD 78
Query: 339 KCGHHDCGQENTFSGDRLGK 280
H+ C ++G G+
Sbjct: 79 HTTHYTCHCPYGYTGKDCGE 98
Score = 24.2 bits (50), Expect = 0.71
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -3
Query: 429 CRNCENGVCSKDNVCLCNESFEMHNGTCRRKCGHHDCGQENTFSGDR 289
C + G + NV C +NGTC K G +C F G R
Sbjct: 248 CPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFECKCPPGFVGPR 294
Score = 22.2 bits (45), Expect = 2.9
Identities = 10/39 (25%), Positives = 11/39 (28%)
Frame = -3
Query: 501 CVAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNVC 385
CV CN + C S C C VC
Sbjct: 315 CVQLVNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGVC 353
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 25.8 bits (54), Expect = 0.23
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 519 KCTNGXCVAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNV 388
KC C P C N + GEC ++C N + V S NV
Sbjct: 704 KCFTMEC--PQVTCPDNMKLEKVPGECCAICVNATSLVESNRNV 745
>AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein.
Length = 199
Score = 25.0 bits (52), Expect = 0.41
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -3
Query: 474 CNDGFSLID--GECRSVCRNCENGVCSKDNVCLCNESFEMHNGTCRRKCGHHDCGQENTF 301
C +G + +D + +C+ G N C+ + +NG+C + +C +N +
Sbjct: 77 CENGGTCVDKINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECNCKNGW 136
Query: 300 SG 295
G
Sbjct: 137 KG 138
>EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine
vasopressin-like peptide protein.
Length = 146
Score = 22.6 bits (46), Expect = 2.2
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = -3
Query: 501 CVAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNVCLCNE 373
C+A C N G DG C C C D C ++
Sbjct: 90 CIAGSAPCRKNTGRCAFDGIC------CSQDSCHADKSCASDD 126
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 21.8 bits (44), Expect = 3.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 428 QTDLHSPSIRLNPSLQEHFSGGATQXP 508
QT H P +PSL GG + P
Sbjct: 69 QTAPHGPPYAPHPSLSSGLGGGLSGMP 95
>AM712903-1|CAN84642.1| 148|Tribolium castaneum hypothetical
protein protein.
Length = 148
Score = 21.4 bits (43), Expect = 5.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 338 FRLQVPLCISKLSLHKHTLSFEQTPFSQFLQTDLHS 445
F Q +C + L+ S+E T F + +TD+++
Sbjct: 96 FVRQFTICFDDVDLNSLYSSYEITRFIRSRETDVYT 131
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.0 bits (42), Expect = 6.6
Identities = 6/27 (22%), Positives = 17/27 (62%)
Frame = +3
Query: 312 LDHNRDVRIFVCRYRCASRSSHCTSTH 392
L+HN +R ++C+ +++ + +T+
Sbjct: 325 LNHNEQLRKYLCKNEDETKNHYSKNTY 351
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 21.0 bits (42), Expect = 6.6
Identities = 6/27 (22%), Positives = 17/27 (62%)
Frame = +3
Query: 312 LDHNRDVRIFVCRYRCASRSSHCTSTH 392
L+HN +R ++C+ +++ + +T+
Sbjct: 217 LNHNEQLRKYLCKNEDETKNHYSKNTY 243
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 20.6 bits (41), Expect = 8.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 371 LSLHKHTLSFEQTPFSQFLQTDLHSPSIRLNP 466
LSL + Q+P ++ Q L+ P + L+P
Sbjct: 95 LSLKHAVVHPGQSPAEKYDQQHLYHPQVLLSP 126
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,711
Number of Sequences: 336
Number of extensions: 2010
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -