Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   3.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   5.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.0  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   9.0  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 501 CVAPPEK-CSCNDGFSLIDGECRSVCR-NCENGVCSKDNVCLCNESFEMHNGTCRRKCGH 328
           C A  EK C C  G   I   C ++ + N E   C  +NVC  +E       TC+++C  
Sbjct: 306 CTATVEKFCLC--GKESIHARCSNISKVNTEPFRC--ENVC--DELLPCGEHTCKKRCHS 359

Query: 327 HDCG 316
             CG
Sbjct: 360 GLCG 363


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 378 NESFEMHNGTCRRKCGH 328
           +E  E  +GTC  KCGH
Sbjct: 82  SEGDEYRHGTCESKCGH 98


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 516 CTNGXCVAPPEKCSCNDGFSLI---DGECRSVCRNCENGVC 403
           C +G C +   +C     FS +      C+  C+N E+G C
Sbjct: 415 CASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQN-EDGTC 454


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +3

Query: 345 CRYRCASRSSHCTSTHYPLSKHHFHSFYKQTCI 443
           C++   +RS HC   +  + K   H  +   C+
Sbjct: 163 CKFEKPARSKHCRLCNICVEKFDHHCIWINNCV 195


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 360 ASRSSHCTSTHYPLSKHHFHSFY 428
           +S SSH  ST YP++K H H+ Y
Sbjct: 58  SSGSSHYISTIYPVNKTH-HTEY 79


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 306 YFLDHNRDVRIFVCRYRCASRSSH-CTSTHYPLSKHH 413
           + ++ NRDV   +  YR + R SH  +S++ P  K H
Sbjct: 86  HHVEENRDVPSILENYRNSKRKSHNFSSSNTPYLKLH 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,629
Number of Sequences: 5004
Number of extensions: 32078
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)