Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0980 + 7754841-7754971,7757048-7757330,7757435-7757640,775... 30 0.98
05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448 29 2.3
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 29 2.3
01_06_0203 - 27487469-27489787 29 2.3
07_03_0039 - 12718972-12720699 28 4.0
11_01_0672 - 5485017-5485111,5485187-5485408,5488704-5488893,548... 28 5.2
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 28 5.2
06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611 23 5.3
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 27 6.9
01_01_0153 - 1352982-1353731 27 6.9
06_03_0543 + 21967787-21970261 27 9.1
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 27 9.1
04_03_0801 - 19828175-19828770,19828913-19828994 27 9.1
01_06_0199 - 27467548-27469992 27 9.1
>01_01_0980 +
7754841-7754971,7757048-7757330,7757435-7757640,
7757687-7757879,7758912-7759104,7759555-7759589
Length = 346
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 447 GECRSVCRNCENGVCSKDNVCL 382
G CR VC C+ V S D+ CL
Sbjct: 246 GRCRGVCTICKGDVASADHACL 267
>05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448
Length = 92
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -3
Query: 441 CRSVCRNC---ENGVCSKDNVCLCNESFEMHNGTCRRKC 334
C + C+ C G +NVC C + HNG R KC
Sbjct: 55 CGTCCQRCGCVPPGTSGNENVCPCYANMTTHNG--RHKC 91
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -3
Query: 510 NGXCVAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKD-NVCLCNESFEMHNGTCRRKC 334
NG C P KC+ G +G C CE+G D + +C+E +H G C
Sbjct: 565 NGSC---PAKCT-GHGICKANGICE-----CESGWTGIDCSTAVCDEQCSLHGGVCDNDY 615
Query: 333 GHHDC 319
+ C
Sbjct: 616 AGYTC 620
>01_06_0203 - 27487469-27489787
Length = 772
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 510 NGXCVAPPE-KCSCNDGFSLIDGECRSV-CRNCENGVCSKD 394
NG C PE +CSC GF ++D + S CR + C K+
Sbjct: 286 NGICEYLPELRCSCPPGFEMVDPQNWSKGCRPTFSYNCGKE 326
>07_03_0039 - 12718972-12720699
Length = 575
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -3
Query: 354 GTCRRKCGHHDCGQENTFSGDRLGKNNT*VLNXXXXXXXXXXXXXXIDYFHALAMRGREK 175
G CRR +D G E GD +G NN V + +F L M G E
Sbjct: 230 GVCRRTWMFYDAGSEVGGIGDLVGCNNQRVF----LELEEERIGKMLKFFKGLGMAGEEV 285
Query: 174 GKVLAHCSLLF 142
G+ L ++F
Sbjct: 286 GRFLLTNPMVF 296
>11_01_0672 -
5485017-5485111,5485187-5485408,5488704-5488893,
5488974-5489078,5489291-5489569,5489979-5490227
Length = 379
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 465 GFSLIDGECRSVCRNCENGVCSKDNVCLC 379
GF +C C N +G C N CLC
Sbjct: 116 GFVRAQQDCDDYCSNTYSGNCENCNGCLC 144
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Frame = -3
Query: 513 TNGXCVAPPE---KCSCNDGFS---LIDGECRSVCRNCEN------GVCSKDN---VCLC 379
TN C P +C+C+ G+ I C + +N G+C+ C C
Sbjct: 57 TNSICNDDPSGGYRCNCSHGYEGNPYIKDGCEDINECLDNVTYPCPGICNNTMGSFTCSC 116
Query: 378 NESFEMHNGTC--RRKCG 331
++ M NGTC RK G
Sbjct: 117 HQGNYMENGTCIPNRKSG 134
>06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611
Length = 135
Score = 23.4 bits (48), Expect(2) = 5.3
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 420 CENGVCSKDNVCLCNESFEMHNGTCRRKCGHHDCGQE 310
C + VCS N NE C C +H C +E
Sbjct: 92 CTSSVCSNINTFAGNEEGNGAVERCNEAC-YHFCNKE 127
Score = 23.0 bits (47), Expect(2) = 5.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 486 EKCSCNDGFSLIDGECR 436
E+CS G ++DG+C+
Sbjct: 51 ERCSKLSGCKIVDGKCK 67
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 519 KCTNGXCVAPPEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNVCLCNESFEMHNGTC 346
KC++G P K C D +D C+N + S D C C M NG C
Sbjct: 42 KCSHGYEGNPYIKDGCKDINECLDNATYPCMGICKNTIGSFD--CSCYPGSYMKNGFC 97
>01_01_0153 - 1352982-1353731
Length = 249
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 489 PEKCSCNDGFSLIDGECRSVCRNCENGVCSKDNVCLCNESFEMHNG 352
P C C D EC C++C+ S+ +C + F H G
Sbjct: 199 PPTCRCMDEVK----ECADACKDCQRVESSEPPRYVCKDRFTGHPG 240
>06_03_0543 + 21967787-21970261
Length = 824
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 510 NGXCV-APPEKCSCNDGFSLIDGECRS 433
NG CV P C+C G+ +ID RS
Sbjct: 288 NGICVYTPVPACACAPGYEIIDPSDRS 314
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 489 PEKCSCNDGFSLIDGECRS-VCRNCENGVCSKDNVCLCNESFEMHNGTCRRKCGHHDCGQ 313
PE +C + ++ G C S C +N VC KDN C + + + T ++C + G
Sbjct: 365 PEGSTCCCSWRVL-GLCLSWSCCELDNAVCCKDNRYCCPHDYPVCD-TASQRCFKANNGN 422
Query: 312 ENTFSG 295
+ G
Sbjct: 423 FSVMEG 428
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 507 GXCVAPPEKCSCNDGFSLIDGECRSVCRNCENGVC 403
G CV PP +C C +DG C C G C
Sbjct: 152 GGCVPPPPRCKCG-----VDG-CGGGCSGGHGGEC 180
>01_06_0199 - 27467548-27469992
Length = 814
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 510 NGXCVAPPE-KCSCNDGFSLID 448
NG CV P +CSC G+ +ID
Sbjct: 293 NGLCVYLPSLRCSCPPGYEMID 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,485
Number of Sequences: 37544
Number of extensions: 206871
Number of successful extensions: 571
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -