Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    27   0.088
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    27   0.15 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = -3

Query: 483 KCSCNDGFSLIDGECRSVCRN-CENGVCSKDNV--CLCNESF-EMHNGTC--RRKCG 331
           KC  N+ FS  DG C+  C N     +C K     C+C   +       C  R KCG
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKCG 92


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 483 KCSCNDGFSLIDGECRSVCRN 421
           KC  N+ FS  DG C+  C N
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPN 56


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 VPLCISKLSLHKHTLSFEQTPFSQFLQTD 436
           +P+  S   LH H + ++Q+P+  +   D
Sbjct: 67  LPIYQSHHHLHHHQVLYQQSPYLMYENPD 95


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 369 SSHCTSTHYPLSKHHFHSFYKQTCIPHQ 452
           +S  TST   + ++H +S    T  PHQ
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSVTNSPHQ 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,994
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)