Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             38   0.005
At4g02440.1 68417.m00331 F-box family protein  to circadian cloc...    32   0.27 
At1g33410.1 68414.m04136 expressed protein                             29   1.9  
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    27   7.7  
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)...    27   7.7  
At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 510 NGXCVAPPEKCSCNDGFSLIDGECRSVCRNCE-NGVCSKDNVCLCNESF---EMHNGTCR 343
           NG CV    KC C  G+   D   RS   NC  +G C+   VC+C   F   +     C 
Sbjct: 610 NGDCV--DGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTAICD 667

Query: 342 RKCGHH 325
            +C  H
Sbjct: 668 EQCSLH 673


>At4g02440.1 68417.m00331 F-box family protein  to circadian clock
           coupling factor ZGT (GP|14210079) {Nicotiana tabacum};
           contains Pfam PF00646: F-box domain
          Length = 336

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 387 CLCNESFEMHNGTC-RRKCGHHDCGQ 313
           CLC+E++++H+  C RR  G HD G+
Sbjct: 287 CLCDETWDLHSSFCLRRVFGFHDDGE 312


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 500 VWRHQKSAPAMMDLV*LMGNAGLFVETVKMVFAQRI 393
           VWR  K++P  ++L+ L   +G  +  ++ VFAQ +
Sbjct: 73  VWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTL 108


>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 262

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 426 RNCENGVCSKDNVC-LCNESFEMHNGTCRRKCGHHDCG 316
           R  E+    +D+VC +C  SF +    CR  CGH  CG
Sbjct: 61  RKIESESPPEDDVCPICFGSFTV---PCRGNCGHWYCG 95


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 278 FFPRRSPLKV-FS*PQS*CPHFRLQVPL 358
           F+P    LK  ++ P+  CPHF L VPL
Sbjct: 164 FWPGSEVLKSSWTCPEGYCPHFNLSVPL 191


>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
           gibberellin-responsive protein 2 identical to SP|P46688
           Gibberellin-regulated protein 2 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -3

Query: 486 EKCSCNDGFSLIDGECRSVCRNCE---NGVCSKDNVCLCNESFEMHNGTCRRKC 334
           ++CS +    L    C S C  C     G     ++C C  S   H G  R KC
Sbjct: 47  DRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGG--RLKC 98


>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 596

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 332 PHFRLQVPLCISKLSLHKHTLSFEQTPFSQFLQTDLHSPSIRLNPSLQEHFSGGAT 499
           P F  +  L +S+L L +   +  Q  +++ L   L + SI+L  SL  HFSGG T
Sbjct: 28  PIFYTRRDLFLSRL-LRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHFSGGIT 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,570,482
Number of Sequences: 28952
Number of extensions: 174138
Number of successful extensions: 505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)