Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F02f
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 243 6e-65
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 235 1e-62
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 222 9e-59
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.43
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.57
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 3.0
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 5.3
09_06_0319 - 22293869-22293906,22294539-22295808 27 5.3
06_02_0084 - 11547820-11548773 27 5.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 5.3
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 7.0
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 7.0
02_03_0106 + 15292869-15296138 27 7.0
02_01_0759 - 5628913-5630870,5631023-5631047 27 7.0
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 27 9.2
04_04_1108 + 30961600-30962013,30963131-30964465 27 9.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 243 bits (594), Expect = 6e-65
Identities = 108/141 (76%), Positives = 122/141 (86%)
Frame = +3
Query: 3 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
GRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
SEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 363 PQGTVARVRIGQPIMSVRSSD 425
PQGT ARV IGQ ++SVR +
Sbjct: 122 PQGTCARVDIGQVLLSVRCKE 142
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 235 bits (575), Expect = 1e-62
Identities = 105/143 (73%), Positives = 119/143 (83%)
Frame = +3
Query: 12 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 191
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 192 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 371
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 372 TVARVRIGQPIMSVRSSDRWKGH 440
T ARVRIGQ ++SVR D H
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAH 454
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 222 bits (543), Expect = 9e-59
Identities = 99/132 (75%), Positives = 114/132 (86%)
Frame = +3
Query: 21 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 200
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 201 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 380
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 381 RVRIGQPIMSVR 416
RV IGQ ++SVR
Sbjct: 124 RVDIGQVLLSVR 135
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 123 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 242
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 0.57
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 403 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 311
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 357 GKPQGTVARVRIGQPIMSVRSSD 425
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 229 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 128
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 357 GKPQGTVARVRIGQPIMSVRSSD 425
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 306 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 434
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 141 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 25
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 7 AGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 162
A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 204 AWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 302 NVIMRWS**APDWDAWCVWQASGYCSTCSHWT 397
NV+ RW P AWC + S + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 268 LMRIWN*SFPQFFTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKI 95
L+ W+ +FP++ LL + R EL CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 439 CPFHLSLERTDMMGCPMRT---RATVP*GLPNAPRIPVWSLSAPAHDNI 302
CP SLER D+ CP+ T A V G PN + V S S +D +
Sbjct: 231 CP---SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDGL 276
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -1
Query: 172 SYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFGYG 44
S D + T++ +SS++ + L + ++++ + R+NLDF +G
Sbjct: 230 SKQCDYEITYADRSSSMGI-LARDNMQLITADGERENLDFVFG 271
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 216 CSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 112
C + PP PL++ V + P+A + S + +++S
Sbjct: 103 CGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,513
Number of Sequences: 37544
Number of extensions: 330470
Number of successful extensions: 956
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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