Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F02f
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         50   7e-07
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.58 
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              30   0.77 
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   1.3  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   1.8  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   1.8  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   3.1  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               28   3.1  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   4.1  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   5.4  
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)                      27   7.2  
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)                   27   7.2  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      27   9.5  
SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +3

Query: 342 MRGAFGKPQGTVARVRIGQPIMSVRSSD 425
           MRGAFGKPQGTVARV IGQ I+S+R+ D
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKD 28


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 192 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 311
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -2

Query: 393 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 214
           +C  V Q P AC   + S  GA +       Y C    K  V CG G          T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594

Query: 213 SRYVLPPKPLSSA 175
           S     P  L ++
Sbjct: 595 SAGFYCPVELGTS 607


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 4   GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 138
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 195 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 79
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 223 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 92
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 223  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 92
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 27  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 206
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 207 IC 212
           +C
Sbjct: 500 MC 501


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
 Frame = -2

Query: 282 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 133
           G    + GY   P+ + S R  Y +   LPP+    P SS + ++  P   + E+     
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418

Query: 132 -----RQRSLSSYPNRRYGSWDQVHPDR 64
                RQ    SY +RRYG ++  +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 350 CVWQASGYCSTCSHWTAHHV 409
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 205  RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 92
            R +S+ S+ SC+ S  +    SGK   + LF  KS+ R
Sbjct: 983  RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020


>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
          Length = 153

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 177 AVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 70
           A+    TP+ R  E+RQR+ ++   RR  S D ++P
Sbjct: 102 AIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137


>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
          Length = 617

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 186 LSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 46
           LS  ++I   P  S     SR   +S  P  R    + +HPD  S SDT
Sbjct: 140 LSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 251  LILSAVLYEVLIAADTS-CLQSL*AQLFIFVGHQVHAQWKVVN 126
            L LSAV+  +L   DT   ++ L    F+FV  Q   QW  +N
Sbjct: 4116 LTLSAVVLFILRMLDTQKTIKKLRENPFVFVSFQYATQWAELN 4158


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 126  VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD-QFH 257
            +D  P C   VS  YE   + +    R  C K L ++C  D +FH
Sbjct: 1061 LDPTPECTERVSKTYESGHTLSTATARQQCLKELKESCNDDLEFH 1105


>SB_37420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 282 GKGEVSCGYGTDPFRSSLRGTYC-SRYVLPPKPLSSAVHI 166
           G GE++CG+G D  R      Y   R  L P  + +  H+
Sbjct: 257 GSGEMNCGHGLDTDREEWENGYAIMRLDLTPAGIGNPDHL 296


>SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 445 TTCPFHLSLERTDMMGCPMRTRATVP*GLPNA 350
           + CP+H   +   +  CP R+R     G+P A
Sbjct: 89  SNCPYHSRRDERSVSNCPYRSRRDERLGMPCA 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,044
Number of Sequences: 59808
Number of extensions: 367084
Number of successful extensions: 1294
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)