Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F02f
(451 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 238 1e-63
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 238 1e-63
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 237 2e-63
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 1.9
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 2.5
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 3.4
At5g48310.1 68418.m05968 expressed protein 27 4.4
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 4.4
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 5.9
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 5.9
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 5.9
At1g53180.1 68414.m06027 expressed protein 27 5.9
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 27 7.7
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 27 7.7
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 7.7
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 238 bits (582), Expect = 1e-63
Identities = 108/146 (73%), Positives = 121/146 (82%)
Frame = +3
Query: 3 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 363 PQGTVARVRIGQPIMSVRSSDRWKGH 440
GT ARV IGQ ++SVR D H
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDNHGVH 147
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 238 bits (582), Expect = 1e-63
Identities = 109/146 (74%), Positives = 122/146 (83%)
Frame = +3
Query: 3 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 363 PQGTVARVRIGQPIMSVRSSDRWKGH 440
GT ARV IGQ ++SVR D GH
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDA-HGH 146
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 237 bits (581), Expect = 2e-63
Identities = 109/146 (74%), Positives = 122/146 (83%)
Frame = +3
Query: 3 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 182
GRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 183 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 362
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 363 PQGTVARVRIGQPIMSVRSSDRWKGH 440
GT ARV IGQ ++SVR D GH
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDA-HGH 146
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 183 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 314
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 180 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 302
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 159 SDEYEQLSSEALEAGRICCNKYLV 230
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 207 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 296
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 176 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAP 3
LF+ + +++ A K+ N L + I+ +L T+ R+R F+ AVP SC P P
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLP 792
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 111 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 284
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 213 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 308
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 282 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 398
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 390 CEHVLQYPEACQTHHAS 340
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 9 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 113
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 26.6 bits (56), Expect = 7.7
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 300 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 121
Y CG RG E +C P ++ G+Y SR P K S + RR+PS SR RS
Sbjct: 124 YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 178
Query: 120 LS 115
S
Sbjct: 179 YS 180
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 26.6 bits (56), Expect = 7.7
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 300 Y*CG*RGKGEVSCGYGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRS 121
Y CG RG E +C P ++ G+Y SR P K S + RR+PS SR RS
Sbjct: 83 YRCGERGHIERNCKNSPSPKKARQGGSY-SR--SPVK--SRSPRRRRSPSRSRSYSRGRS 137
Query: 120 LS 115
S
Sbjct: 138 YS 139
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 VPDPKIRIFDLGKKRATVDDFPL 143
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,946
Number of Sequences: 28952
Number of extensions: 246965
Number of successful extensions: 789
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -