Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.56 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   0.73 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   2.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   3.0  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.0  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 312 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNI 425
           EE++  Q+  +KLR     E  D +L +  FG TE N+
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNL 100


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 360 KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFAD 482
           +L E  D  L  ETFGV+ G+IG+  +F  TT +   +  D
Sbjct: 39  QLNEAGD-ELNDETFGVSAGSIGRDFDFSGTTAQASAQLED 78


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 315 EMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADL 485
           E   E+K   +      ++E D  +A E   +T     K  + +P +K+E    AD+
Sbjct: 145 EKESEEKETNEASPASEEDEDDFNVAWEVLDLTRVMQSKAVDAYPDSKDEKIRLADI 201


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 330  QKLAEKLRQQ-KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADLLTKKITF 506
            +KL +   Q  K+  E+   L       +   +G+L+  H +   +  EFAD L+K I++
Sbjct: 1182 EKLCDSSSQNDKISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISY 1241

Query: 507  Y 509
            +
Sbjct: 1242 H 1242


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 297 TEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNF 443
           T +T     P   LA+  +QQ    ++DLR+ ++   +T G +  +D F
Sbjct: 224 TSETVYAHEPSDSLAKASKQQIPTVQNDLRILIK-LDITIGRLNLIDQF 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,201
Number of Sequences: 5004
Number of extensions: 25982
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)