Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   82   3e-16
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 29   1.8  
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   4.1  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  27   7.1  
SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)                  27   9.4  
SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24)                  27   9.4  
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 27   9.4  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   27   9.4  

>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
 Frame = +3

Query: 63   DADNFEPKLPTTLAASNKWEGEDEDDNVXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXIH 242
            D + FEP        ++KWEGEDEDD++                              + 
Sbjct: 1097 DDEKFEPGEVPADGVTDKWEGEDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLK 1156

Query: 243  DKIXXXXXXXXXXXXXLVTEKTA-----EEMTPEQKLAEKLRQQKLQEESDLRLAMETFG 407
              +                EK       +E+TPE+++AEKLR+QK+ EESDL +AM+TFG
Sbjct: 1157 QILKEKEEQKLLEEKRKAEEKQKLEEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTFG 1216

Query: 408  V---TEGNIGKLDNFHPTTKEEYTEFADLLTKKITFYKA 515
            V    E +   LD+  P+TKEE+TE++ LL +K+T +++
Sbjct: 1217 VGTQEEASRTGLDSMIPSTKEEFTEYSKLLVEKLTKFES 1255


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 400 VSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSAFSRSCRS 260
           V +AS+  DSS  FC+  +  N C  ++ S      +R  F   CR+
Sbjct: 12  VLIASQIQDSSGGFCYEKYKNNSCRSLLKSG----GKRVTFDECCRN 54


>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +3

Query: 318 MTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGN 422
           ++PE ++ ++LRQ+ L++ S +++  ++ G+  G+
Sbjct: 34  LSPENRVVQQLRQELLKKSSGIKILPKSEGIPNGD 68


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 481  SANSVYSSFVVGWKLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVF 302
            S+ + YSS+    K+ S  +LPS +P     ++ S  SC  C    S +  S   +S+  
Sbjct: 2411 SSTTTYSSYS---KIPSTVILPSASPSRWRLTQLSSQSCESCSTRTSKSQESNTGTSSYL 2467

Query: 301  SVTRRSAF 278
              T+ ++F
Sbjct: 2468 QYTQPASF 2475


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 291 LVTEKTAEEMTPEQKLAEKLRQQKLQEESDLR 386
           +V ++  +E+   +KL EKLRQ+  Q   D R
Sbjct: 217 VVMQELRDELISNKKLVEKLRQENKQLSQDAR 248


>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
          Length = 536

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 321 TPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEE 464
           T E+  A KLR+ KL+E      AME  G  E  I K D     +KEE
Sbjct: 382 TKEEIQAVKLREDKLKE------AMEVIGSAEQKIKKQDPKAKDSKEE 423


>SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
          Length = 387

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 321 TPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEE 464
           T E+  A KLR+ KL+E      AME  G  E  I K D     +KEE
Sbjct: 233 TKEEIQAVKLREDKLKE------AMEVIGSAEQKIKKQDPKAKDSKEE 274


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 445 WKLSSLPMLPSVTPKVSMASRKSDSSCSFCWR 350
           W  S++ MLP +T   SM      ++C+  WR
Sbjct: 137 WLASAVTMLPPLTGVTSMTYEAGQTNCAPNWR 168


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 478 ANSVYSSFVVGWKLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFS 299
           + + YSS+    K+ S  +LPS +P     ++ S  SC  C    S +  S   +S+   
Sbjct: 403 STTTYSSYS---KIPSTVILPSASPSRWRLTQLSSQSCESCSTRTSKSQESNTETSSYLQ 459

Query: 298 VTRRSAF 278
            T+ ++F
Sbjct: 460 YTQPASF 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,325,025
Number of Sequences: 59808
Number of extensions: 201486
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)