Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305F01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H... 28 3.5
AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchang... 28 3.5
AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchang... 28 3.5
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 28 4.7
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 27 6.2
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 27 6.2
Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z19555-4|CAA79617.1| 182|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 27 8.1
AF016434-1|AAB65875.2| 313|Caenorhabditis elegans Serpentine re... 27 8.1
>AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H
exchanger isoform 3 protein.
Length = 670
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 306 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 473
T E+ K+ L+ ++L++ +S++R+A E VT ++ +L F + + + YT
Sbjct: 523 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 581
Query: 474 FADLLTKKITFYKAK 518
F+DLL KK+ K +
Sbjct: 582 FSDLLDKKLNELKVQ 596
>AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchanger
protein 3, isoform b protein.
Length = 651
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 306 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 473
T E+ K+ L+ ++L++ +S++R+A E VT ++ +L F + + + YT
Sbjct: 504 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 562
Query: 474 FADLLTKKITFYKAK 518
F+DLL KK+ K +
Sbjct: 563 FSDLLDKKLNELKVQ 577
>AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchanger
protein 3, isoform a protein.
Length = 670
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 306 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 473
T E+ K+ L+ ++L++ +S++R+A E VT ++ +L F + + + YT
Sbjct: 523 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 581
Query: 474 FADLLTKKITFYKAK 518
F+DLL KK+ K +
Sbjct: 582 FSDLLDKKLNELKVQ 596
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 3 KSFHINSAADSGVLKMDVSWDADNFEPKLP 92
+S ++S ++SGV VS D D+F P LP
Sbjct: 42 QSVSVSSKSESGVSSSAVSDDEDDFMPDLP 71
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 3 KSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 143
KS + +A +SG +K +W N +P++ + A KW+ +DED N
Sbjct: 109 KSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 3 KSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 143
KS + +A +SG +K +W N +P++ + A KW+ +DED N
Sbjct: 109 KSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149
>Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical
protein C14A4.4b protein.
Length = 594
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 442 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSA 281
+L + +P K + +RK+++ S R+FSAN G + + F R A
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEA 181
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 442 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSA 281
+L + +P K + +RK+++ S R+FSAN G + + F R A
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEA 181
>Z19555-4|CAA79617.1| 182|Caenorhabditis elegans Hypothetical
protein F02A9.3 protein.
Length = 182
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 306 TAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADL 485
TAEE ++LA+ ++ K +EE L ++ + E GKL+ E+ A
Sbjct: 50 TAEEKAALKELAQNHKEYKTEEEFKAALKEKSPSLYE-KAGKLEALLTAKFEKLDATAQA 108
Query: 486 LTKKI 500
L KKI
Sbjct: 109 LVKKI 113
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 442 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSA 281
+L + +P K + +RK+++ S R+FSAN G + + F R A
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEA 181
>AF016434-1|AAB65875.2| 313|Caenorhabditis elegans Serpentine
receptor, class sx protein17 protein.
Length = 313
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 494 LCKEISKLCVLFFCSWVEIVKFTNVTFCYTK 402
L K +S L +F CSW + ++V+ +TK
Sbjct: 219 LLKSLSTLMFVFVCSWSLSILLSHVSLYFTK 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,986
Number of Sequences: 27780
Number of extensions: 146403
Number of successful extensions: 640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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