Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E12f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    35   0.98 
UniRef50_Q8A6K6 Cluster: Putative outer membrane protein, probab...    33   3.0  
UniRef50_A7DBL7 Cluster: Transporter, hydrophobe/amphiphile effl...    32   9.2  
UniRef50_Q2QN61 Cluster: Expressed protein; n=3; Oryza sativa|Re...    32   9.2  
UniRef50_Q9VP73 Cluster: CG12976-PA; n=2; Sophophora|Rep: CG1297...    32   9.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = +1

Query: 106 FFYCLWVDELTAHLV*SGY*SP 171
           F    WVDELTAHLV SGY SP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q8A6K6 Cluster: Putative outer membrane protein, probably
           involved in nutrient binding; n=1; Bacteroides
           thetaiotaomicron|Rep: Putative outer membrane protein,
           probably involved in nutrient binding - Bacteroides
           thetaiotaomicron
          Length = 1119

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 476 PINHLKIEDVSKVKQYIPAEFTNFY 402
           P+++L IED +K K+++   FTNFY
Sbjct: 534 PLSYLDIEDETKTKRFLATAFTNFY 558


>UniRef50_A7DBL7 Cluster: Transporter, hydrophobe/amphiphile
           efflux-1 (HAE1) family; n=3; Alphaproteobacteria|Rep:
           Transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family - Methylobacterium extorquens PA1
          Length = 1054

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +3

Query: 63  LRSYLVSHDTT*LVFFLLLMGGRAHSPPGVKWLLKPIDIYNVNAPPS*DISSKV*GSKFL 242
           L S +VS   T  +  LLL       P   +W  KP+D +NV    S D  ++  G  +L
Sbjct: 480 LISAIVSLTLTPALCGLLLKPHAKDGPRKTRWWRKPLDGFNVALERSADFVARTIG--WL 537

Query: 243 RSHVVITVA 269
             H+V+T+A
Sbjct: 538 SRHIVLTLA 546


>UniRef50_Q2QN61 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 786

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 509 SQDNPAYSGKVPINHLKIEDVSKVKQYIPAEFTNFY 402
           SQ     SG+V +NHL +ED  K K+   A  +NF+
Sbjct: 268 SQSQRYSSGRVNLNHLSLEDTMKEKRIGEASGSNFF 303


>UniRef50_Q9VP73 Cluster: CG12976-PA; n=2; Sophophora|Rep:
           CG12976-PA - Drosophila melanogaster (Fruit fly)
          Length = 314

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 509 SQDNPAYSGKVPINHLKIEDVSKVKQYIPAEFTNFYRE 396
           SQ  P YSG+ P+N + +E  S V  + PA+  ++  E
Sbjct: 250 SQSTPVYSGEYPVN-MSVESASCVPYHCPADARDYEEE 286


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,552,483
Number of Sequences: 1657284
Number of extensions: 9702354
Number of successful extensions: 17559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17558
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)