Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.2  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   5.2  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 123 GGRAHSPPGVKWLLKPIDIYN 185
           GG  H P  V WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 452 DVSKVKQYIPAEFTNFYREILQW 384
           +V+ VK  +    T+FY+EIL W
Sbjct: 905 NVANVKARLFPSMTDFYKEILSW 927


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 49  ISRRNFVPTWCPTTPHN*FFFYCLWVDELTA 141
           ++ R F   + PT+    F  +CLW+  L A
Sbjct: 485 LANRFFTANFTPTSKTGAFVSWCLWITVLVA 515


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 FFLLLMGGRAHSPPGVKWLLKPIDIYNVNAPPS 203
           FFL+   G  ++  G+ W+ K   IY+VN  PS
Sbjct: 138 FFLIFYYG-IYNAVGLLWITKLFHIYSVNWCPS 169


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -1

Query: 155 LHTRWAVSSSTHKQ*KKN*LCGVVGHQVGTKFLRLM*KRHNLQKNLVPNS 6
           LHT   VS+       KN  C  + H +  +  R     HN  K ++  S
Sbjct: 23  LHTGTLVSTFRQSSPAKNATCTTLNHLLSAQHTRPQLNIHNFGKEILDQS 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,486
Number of Sequences: 5004
Number of extensions: 41940
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)