Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272     32   0.32 
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     30   1.3  
05_04_0423 - 21126038-21126556                                         29   2.3  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     28   4.0  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    27   9.1  

>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
          Length = 786

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 509 SQDNPAYSGKVPINHLKIEDVSKVKQYIPAEFTNFY 402
           SQ     SG+V +NHL +ED  K K+   A  +NF+
Sbjct: 268 SQSQRYSSGRVNLNHLSLEDTMKEKRIGEASGSNFF 303


>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 71  LPGVPRHHIISFFFIAYGWTSSQPTWCEVVTKAHRHLQRKC 193
           L G PR     F  + YGW +    W   +  A+ HL+R C
Sbjct: 117 LKGKPR--FADFSLVPYGWGAYVSPWVAALGPAYPHLERIC 155


>05_04_0423 - 21126038-21126556
          Length = 172

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 KWLLKPIDIYNVNAPPS*DISSKV*GSKFL 242
           +W   P DIY +N+  S D+S+K  G  FL
Sbjct: 120 RWEQPPADIYKMNSDASFDVSTKTGGWGFL 149


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  GFFANCVVSTLAEGTSFLPGVPRHHI 97
           GF +  V STL EG + LP +  HH+
Sbjct: 212 GFSSAAVKSTLEEGGAMLPSLGGHHV 237


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 20   GFFANCVVSTLAEGTSFLPGVPRH 91
            G + NC VST  E   F+ G+P H
Sbjct: 1162 GRYINCEVSTRHENCIFVRGIPMH 1185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,526,234
Number of Sequences: 37544
Number of extensions: 263536
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)