Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.24 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   1.3  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   1.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.2  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   2.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   3.0  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   3.0  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   3.9  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.8  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   9.0  

>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 450 KDEVETPSHVRKMIEVFDNRNEL 518
           K  VET SH R  IE+FD ++EL
Sbjct: 123 KQRVETQSHRRSKIEIFDAQDEL 145


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 385 GLSTVLFASSDFGITVSLPSKLIVALTSRR 296
           GL  VLFA+  F I +++P+K +V    R+
Sbjct: 542 GLLKVLFATETFSIGLNMPAKTVVFTNVRK 571


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 318 ISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPSHVRKMI 491
           +SF  NDTV+   E   + +D   +    +YK +  +   D +L+D V+  S +  +I
Sbjct: 14  LSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSD---DSHLQDVVKNESKIMCLI 68


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 366 NKTVDKPDNNEGAVYK-VSYEEAAVDKYLKDEVETPSHV-RKMIEVFDNRNEL 518
           +K + KP  +E A+Y+  ++ +  V+ Y  D+V T   V R  ++ F N+  +
Sbjct: 5   SKAISKPKEHESAIYRNANFPDHLVETY-SDDVHTLFDVFRHSVKQFGNKKAM 56


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +3

Query: 240 NNAYCPSHTGRSEPSFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVY-KV 416
           NN++  S      PS  +     ++T S   +  V+P S+D    +  P   + A Y   
Sbjct: 18  NNSHGDSFVNEGPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKASYSNK 77

Query: 417 SYEEAAVDK----YLKDEVETPS 473
           S  +A + K     LK  +ET S
Sbjct: 78  SPNKAPIQKSRGSSLKSHLETES 100


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +3

Query: 282 SFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEV 461
           + G R++     I  E +DT IP+ E+   T  K   +   +Y  S  E   D   K+  
Sbjct: 194 NMGSRKKRKGFVIDSEDSDTGIPREENVTIT-RKTKLSSNILYSDSDTERQSDSGSKNVA 252

Query: 462 ETPSHVRKMIEVFDNRNE 515
              S +++  +V  + +E
Sbjct: 253 RQFSRIKRKRKVLSSSSE 270


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 333 NDTVIPKSEDANKT-VDKPDNNEGAVYKVSYEEAAVDKYLKDEVE 464
           NDT I K ED N+  VD  +NN+    + + EE   +    +E E
Sbjct: 70  NDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEE 114


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 385 GLSTVLFASSDFGITVSLPSKLIV 314
           GL  VLFA+  F + V++P+K +V
Sbjct: 638 GLVKVLFATETFAMGVNMPAKSVV 661


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 324 FEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAA 434
           +E N+T+I  + +  K V   DN + A Y+  Y E+A
Sbjct: 186 YELNNTLITAAMEIIKDVVLEDNEKAASYRKLYNESA 222


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 291 SRTKAPNDRCDSDSTHC*YIYLGSCNDLT 205
           +RT+ PN   + D+      Y+G CN LT
Sbjct: 11  TRTEIPNQASNGDAVPNTDAYMGLCNSLT 39


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 312 ATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVET 467
           +T S E ++ V+  S D +   +KP+  + AV +   + A  D  +K  VET
Sbjct: 84  STQSPETSENVVKNSVDES-VAEKPEKEDLAVIESEDKAAKPDGEIKKNVET 134


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 NDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAA 434
           +D+    S D NK V++ ++NE ++  +S+ + +
Sbjct: 139 SDSATSSSSDTNKKVNRKEHNELSLSHLSFNDTS 172


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 405 LHPHYCQVYLQFCLRPQTSVLLCRCPQS*LLR*RHDVV 292
           LH   C VY++ C+        CR  +S L R + DVV
Sbjct: 238 LHHRRCVVYMKVCVAVYVFDRGCRMLRSFLNRSKFDVV 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,096
Number of Sequences: 5004
Number of extensions: 35325
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)