Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656...    29   3.0  
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331...    28   4.0  
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806...    28   5.2  
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941...    27   9.1  
03_05_0638 + 26317630-26317971,26318058-26318594,26318954-263197...    27   9.1  
03_05_0607 + 26083072-26084154                                         27   9.1  

>04_04_1425 +
           33463039-33463330,33464370-33464460,33465299-33465656,
           33465771-33465944,33466403-33466607,33466717-33466784,
           33467279-33467360,33467513-33467549,33467822-33467913,
           33469219-33469294,33469402-33469585,33469859-33469867
          Length = 555

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/71 (16%), Positives = 35/71 (49%)
 Frame = +3

Query: 297 RRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPSH 476
           RR +++ +     +    + E+ +   D+ ++N GA+   +  + A+++ +  E  +   
Sbjct: 71  RRVISSVLFSSPEEAASGEEEEDDDEEDETEDNHGAIVSYNESKLAIEEMVMKETFSRDE 130

Query: 477 VRKMIEVFDNR 509
             KM+++  +R
Sbjct: 131 CDKMVKLIQSR 141


>03_06_0370 +
           33431696-33432217,33432521-33432796,33433003-33433183,
           33433253-33433455,33433545-33433732,33433844-33434105
          Length = 543

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 387 DNNEGAVYKVSYEEAAVDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           D   G   K+  EEA +D +L  + E   H R +     NR+EL
Sbjct: 277 DQERGGPVKMKIEEANIDGFLSIQGENWGHFRFIAPCTINRSEL 320


>10_05_0019 -
           8049145-8049334,8059808-8060618,8060708-8060783,
           8060856-8061008
          Length = 409

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +3

Query: 207 LSRYRSPNKYINNAYCPSHTGRSEPSFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKP 386
           L  + +P+K  ++        R +     R+R V AT   + +D    K  D N+  ++ 
Sbjct: 119 LPPWANPHKVDDDVGPSRKRTRGQVKLAPRKRRVPATSDSDADDEDDVKERDGNEEGEEE 178

Query: 387 DNNEGAVYKVSYEEAAVDKYLKDEVETPSH 476
           +  E  V      E A D+ +++ V+TP +
Sbjct: 179 EKAEAVV------EKAADEVVENCVDTPGY 202


>06_01_1137 +
           9412230-9412378,9412549-9412634,9413417-9413496,
           9413826-9413881,9414038-9414086,9414692-9414841,
           9414993-9415088,9415442-9415555,9415655-9415785,
           9416171-9416408,9416603-9416656,9417100-9417117,
           9417906-9418722,9418797-9418846
          Length = 695

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 294 RRRDVNA--TISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDE 458
           R+RD+    T S   ND++ P+S   NK      + E  + +   E+  VDK  ++E
Sbjct: 460 RKRDLKPRETKSPASNDSLRPESRKQNKVAQNKASTEEKLKESCAEKTQVDKPAEEE 516


>03_05_0638 +
           26317630-26317971,26318058-26318594,26318954-26319722,
           26319802-26319871,26320103-26320268
          Length = 627

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 360 DANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           D N+  D+ D +E +  +   + + VDK  K    T S  +KM+E     NEL
Sbjct: 168 DVNEIDDETDEDEPSAKRKRGDSSKVDKLKK----TKSGSQKMVEEMSKSNEL 216


>03_05_0607 + 26083072-26084154
          Length = 360

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 128 CPLESCDCPERGFFFIA*MSRRTHGHVKSLQEPK*IYQQCVLSESHRSFGAFVRETTS 301
           C L  C     G F+I     R+   +K   +   + ++C L + H  F + +  T S
Sbjct: 295 CKLLLCLIKNHGIFYITNKGARSTVFLKEAYDDSNLVEKCPLLKFHDRFASLIGRTCS 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,678,958
Number of Sequences: 37544
Number of extensions: 217190
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)