Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       27   8.1  
U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl 4-hydrox...    27   8.1  
AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical...    27   8.1  
AJ277376-1|CAB88202.1|  268|Caenorhabditis elegans prolyl 4-hydr...    27   8.1  
AJ271001-1|CAB71300.1|   58|Caenorhabditis elegans prolyl 4-hydr...    27   8.1  
AJ271000-1|CAB71299.1|   91|Caenorhabditis elegans prolyl 4-hydr...    27   8.1  
AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl 4-hydr...    27   8.1  
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    27   8.1  

>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 327 EGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVETPS 473
           E N  V+PK+ +A   ++ PD  + +V K +   A       D VETPS
Sbjct: 542 ELNKHVVPKNPEA---IETPDERQESVQKSNEASATSSTKPSDPVETPS 587


>L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical
           protein ZK688.10 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 458 FVLEIFIDSGFLV*HLIDCTLIIVRFIYSFVCVLRLRYYC 339
           F +  F DS F +  ++ C L I+  IY+ VC+L + + C
Sbjct: 180 FGVHDFGDSVFGIDPVVMCVLSILYLIYNSVCLLAVLHLC 219


>Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical
           protein B0001.3b protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 192 ELTVMLSRYRSPNKYINNAYCPSHTGRSEPSFGRRRRD 305
           +L V  + +R PN+Y N +  P  T    P    RR D
Sbjct: 317 DLLVPANLHREPNRYENRSASPHSTSGQFPGTSTRRSD 354


>Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical
           protein B0001.3a protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 192 ELTVMLSRYRSPNKYINNAYCPSHTGRSEPSFGRRRRD 305
           +L V  + +R PN+Y N +  P  T    P    RR D
Sbjct: 333 DLLVPANLHREPNRYENRSASPHSTSGQFPGTSTRRSD 370


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 348  PKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLK--DEVETPSHVRK 485
            P++ + N+T +  +++E A  +V YE    ++ +K  + ++  SH+ K
Sbjct: 1139 PQAVEDNETSESEEDDEDAANRVGYETVRPEENMKMMETIQDHSHILK 1186


>Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
 Frame = +3

Query: 138 NHVIVRREVSFLSLR*VDELTVMLSRYRSPNKYINNAYCPSHTGRSEPSFGRRRRDVNAT 317
           NH  +R +    S + ++++   + RY    K  +N     ++GR + +  R+     A 
Sbjct: 277 NHEWIRDKEHMASRKHMNDVIDQMRRYNESRKLKSNVLSAVNSGRFDETTPRQDTPQTAF 336

Query: 318 I--SFEGNDTVIPKSEDANKTVDKP-DNNEGAVYKVSYEEAAVDKYL 449
           +  S  G D        +N   + P D +    YKV     A++  L
Sbjct: 337 VDGSSPGGDCCHRGESSSNDAAEPPADKDLSGAYKVLGSLDAINSLL 383


>Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical
           protein C15H7.4 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 282 SFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKD 455
           S  R+R++     + +  D   P  ++  +T  +PDN E    K   ++   +  LKD
Sbjct: 210 SESRKRKEAKTLATTQSQDLPAPTKDEPERTNSEPDNGEQEKIK-KEKKKGTETSLKD 266


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
 Frame = +3

Query: 138 NHVIVRREVSFLSLR*VDELTVMLSRYRSPNKYINNAYCPSHTGRSEPSFGRRRRDVNAT 317
           NH  +R +    S + ++++   + RY    K  +N     ++GR + +  R+     A 
Sbjct: 277 NHEWIRDKEHMASRKHMNDVIDQMRRYNESRKLKSNVLSAVNSGRFDETTPRQDTPQTAF 336

Query: 318 I--SFEGNDTVIPKSEDANKTVDKP-DNNEGAVYKVSYEEAAVDKYL 449
           +  S  G D        +N   + P D +    YKV     A++  L
Sbjct: 337 VDGSSPGGDCCHRGESSSNDAAEPPADKDLSGAYKVLGSLDAINSLL 383


>U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>AJ277376-1|CAB88202.1|  268|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>AJ271001-1|CAB71300.1|   58|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 58

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 9   LDKYIHDEEERLVQLKKLSEEYSKKNEI 36


>AJ271000-1|CAB71299.1|   91|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 91

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VDKYLKDEVETPSHVRKMIEVFDNRNEL 518
           +DKY+ DE E    ++K+ E +  +NE+
Sbjct: 39  LDKYIHDEEERLVQLKKLSEEYSKKNEI 66


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 482 PDMTRCLNFVLEIFIDSGFLV*HLIDCTLIIVRFIYSFVCVLR 354
           PD  +    VL +  D  FLV  ++ C  +I   I+ FV + R
Sbjct: 7   PDFVQSFQNVLSLLEDDAFLVNFILACISLIAN-IFHFVVITR 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,375,308
Number of Sequences: 27780
Number of extensions: 203362
Number of successful extensions: 518
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)