Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48110.1 68414.m05369 expressed protein contains Pfam profile...    30   0.82 
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    28   3.3  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   3.3  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    28   3.3  
At4g17120.1 68417.m02578 expressed protein                             28   4.4  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    27   5.8  
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain...    27   5.8  
At1g49160.2 68414.m05512 protein kinase family protein contains ...    27   5.8  
At1g49160.1 68414.m05511 protein kinase family protein contains ...    27   5.8  
At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) simil...    27   7.7  

>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 639

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 258 SHTGRSEPSFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEG 401
           ++ GRS+   G R+R   AT   + ND  +P      K  +KP  N G
Sbjct: 140 ANRGRSDGR-GSRQRSGTATAGLQRNDPKLPAGNSLGKISEKPRPNSG 186


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 TVDKPDNNEGAVYKVSYEEAAVDKYLKDEVET 467
           T++   N EGA+ K  YEE   D YL+D  E+
Sbjct: 462 TLEPGQNREGAIMKAVYEE---DAYLEDRSES 490


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 TVDKPDNNEGAVYKVSYEEAAVDKYLKDEVET 467
           T++   N EGA+ K  YEE   D YL+D  E+
Sbjct: 490 TLEPGQNREGAIMKAVYEE---DAYLEDRSES 518


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
            DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 228  NKYINNAYCPSHTGRSEPSFGRRRRDVNATISF-EGNDTVIPKSEDANKTVDKPDN 392
            N+Y       S      P  G+RRRD N + +  E +D  +  S+   KTV    N
Sbjct: 1095 NEYYGTNKKDSIISNDSPDSGKRRRDENISPNVAEDDDFEVSPSQSCKKTVRNKSN 1150


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
 Frame = +3

Query: 69   ITSIDSGSAVPLILLMSMSDAP*NHVIVRREVSFLSLR*V--DELTVMLSRYRSPNKYIN 242
            I   + GS   ++  +  S+ P  +++ +R+ S L  + +     +V   + R  N+   
Sbjct: 1108 IRGFEEGSRFIVVFRLGPSNGPMRYLLYKRQTSMLVKQSLISSSFSVKTFQTRVENRSTV 1167

Query: 243  NAYCPSHTGRSEPSFGRRRRDVNATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSY 422
             +     +G  E S+     +   T +F   D    K  DA    D    +   V+KV  
Sbjct: 1168 KSISVRQSGLGEDSWVLL--EPLTTENFAWEDPYGQKFLDAKVESD----HRSGVFKVDM 1221

Query: 423  EEAAVDKYLKDEVETPSHVRKMIEV 497
            E+ AVD  L  E+E    V+++ ++
Sbjct: 1222 EKGAVDSELCRELEVNFDVQEIGDI 1246


>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 279 PSFGRRRRDVNATISFEGNDTVIPKSEDANKTVDK--PDNNEGAVYKVSYEEAAVD 440
           P FG +RR  N   +  GN    P+    +K   +  PD+ E  + +  ++E   D
Sbjct: 140 PKFGEQRRGPNDRWTDSGNKDAAPEQRRESKWNSRWGPDDKEAEIPRNKWDEPGKD 195


>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 343

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 312 ATISFEGNDTVIPKSEDANKTVDKPDNNEGAVYKVSYEEAAVDKYLKD 455
           A    E ND V  +SE+  K + K D N+GA    S +EA+  K   D
Sbjct: 153 ALSELEEND-VPEESEETTKALSKVDENDGAESNDSLKEASSVKESMD 199


>At1g49160.2 68414.m05512 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 557

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 315 TISFEGNDTVIPKSED-ANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVE 464
           +IS   +    P+S+D AN TV     ++ A    S EE   D+ LK+E+E
Sbjct: 470 SISHSLSSDYCPRSDDEANPTVAATTEDQEAEKPGSLEEEEEDERLKEELE 520


>At1g49160.1 68414.m05511 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 539

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 315 TISFEGNDTVIPKSED-ANKTVDKPDNNEGAVYKVSYEEAAVDKYLKDEVE 464
           +IS   +    P+S+D AN TV     ++ A    S EE   D+ LK+E+E
Sbjct: 452 SISHSLSSDYCPRSDDEANPTVAATTEDQEAEKPGSLEEEEEDERLKEELE 502


>At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 12 (At1g65890) mRNA
           GI:29893228, acyl-activating enzyme 12 [Arabidopsis
           thaliana] GI:29893229
          Length = 578

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 384 PDNNEGAVYKVSYEEAAVDKYLKDEVETPSHVRKMIEVFDNR 509
           P N  G + K    + A     +DEV   S V++ +E F +R
Sbjct: 536 PKNGNGKILKPKLRDIAKGLVAEDEVNVRSKVQRPVEHFTSR 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,591,282
Number of Sequences: 28952
Number of extensions: 181242
Number of successful extensions: 464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)