Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P06742 Cluster: Myosin light chain alkali; n=35; Arthro...    42   0.011
UniRef50_Q4RIA9 Cluster: Chromosome 8 SCAF15044, whole genome sh...    33   4.0  
UniRef50_A5NW30 Cluster: PfkB domain protein; n=3; Alphaproteoba...    32   6.9  

>UniRef50_P06742 Cluster: Myosin light chain alkali; n=35;
           Arthropoda|Rep: Myosin light chain alkali - Drosophila
           melanogaster (Fruit fly)
          Length = 155

 Score = 41.5 bits (93), Expect = 0.011
 Identities = 14/23 (60%), Positives = 21/23 (91%)
 Frame = -3

Query: 492 DCMDPEDDDGMIPYAAFLKKVMA 424
           DCMDPEDD+G IPY+ F++++M+
Sbjct: 127 DCMDPEDDEGFIPYSQFVQRLMS 149


>UniRef50_Q4RIA9 Cluster: Chromosome 8 SCAF15044, whole genome
           shotgun sequence; n=3; Clupeocephala|Rep: Chromosome 8
           SCAF15044, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 549

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
           P++VDI Y+ +   KPLFYT N II  VL   L + V
Sbjct: 193 PTYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 229


>UniRef50_A5NW30 Cluster: PfkB domain protein; n=3;
           Alphaproteobacteria|Rep: PfkB domain protein -
           Methylobacterium sp. 4-46
          Length = 355

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 257 SAGWLRAPPEELSPPRALPA---PVPQSR-ASVF*GPSHRTFVAGKDLI 391
           S GW   PP  L+PPR  PA   P+P  R      GP     V G+ LI
Sbjct: 5   STGWRMRPPAPLAPPRRAPAPGRPLPACRPPGARSGPIPMILVCGEALI 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,902,781
Number of Sequences: 1657284
Number of extensions: 7701611
Number of successful extensions: 24927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24863
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)