Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.18 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.31 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.6  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 235 YNILDTDKPLFYTNNIISTVLYNFL 161
           YNIL   + +F+ N+ ++ +LYN +
Sbjct: 332 YNILYFSRIMFHINSAVNPILYNII 356


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 268 PARAPSHVDIP--YNILDTDKPLFYTNNIISTVLYNFL 161
           P     H++I   YNIL   + + Y N+ I+ +LYN +
Sbjct: 317 PEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLM 354


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 269 LRAPPEELSPPRALPAPVPQSRASVF*G--PSHRTFVAGKDLITKDM 403
           ++A PE++S  R  P P        F G    +R F A     T+D+
Sbjct: 513 IKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQDL 559


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 421 EDITTRHIFSYKILSCDE 368
           E+  TRH+   +I+ CD+
Sbjct: 250 EEYVTRHLIDGRIIGCDQ 267


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 134 IKYTVKHTLCVFLNYYLFI 78
           I +TV   LC +  YY FI
Sbjct: 90  IIFTVHFLLCTYYFYYAFI 108


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 235 YNILDTDKPLFYTNNIISTVLYNFLPLT 152
           Y    T    FY+  I+    YN  PLT
Sbjct: 80  YQSPQTQPARFYSTPIVPHFAYNHNPLT 107


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 202 YTNNIISTVLYNFLPLTVHTKV 137
           + N  + T  YNF   T+H+K+
Sbjct: 414 FFNIFLITPFYNFNENTIHSKL 435


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 510 SLKSQRDCMDPEDDD 466
           SL+   +  DPEDDD
Sbjct: 226 SLEDDDNISDPEDDD 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,509
Number of Sequences: 336
Number of extensions: 2176
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)