Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.97 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   1.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   5.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 275  APPEELSPPRALPAPVPQSRASVF*GPSHRT 367
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 123 CKTHVVRVFKLLFIYLLSTFIMTKI 49
           CK+H  R+ K LFI  LSTF  T I
Sbjct: 410 CKSHFERIKKTLFIDGLSTFSDTLI 434


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 215 QTPFLYEQHNINCFVQLSTFDCTY*SKIKYTVKHTLCVFLNY 90
           + PF+   H  + FVQL+T+  T  S I  ++K  L VF  Y
Sbjct: 550 ENPFIQFDHIDSSFVQLATYIDT--SMIPSSLKPYLSVFAKY 589


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 163 ESCTKQLILCCSYKKGVCPYLRCYTGCRR 249
           ESC K+   CC  KK  C       GC R
Sbjct: 78  ESCEKKKPKCCEKKKPKCCESEQNNGCGR 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,303
Number of Sequences: 5004
Number of extensions: 32137
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)