Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1166 - 30876802-30876899,30877233-30878685                       32   0.24 
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    30   1.3  
03_03_0278 - 16126803-16129049                                         29   2.3  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    28   4.0  
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251...    27   6.9  
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    27   9.1  

>03_05_1166 - 30876802-30876899,30877233-30878685
          Length = 516

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 266 WLRAPPEELSPPRALPAPVPQSRASVF*GPSHRTFVAGKDLITKD 400
           +L  PP+  SPP  LP P P  R  ++  PS   +   K   +K+
Sbjct: 210 YLWTPPKSSSPPTLLPPPPPPPREKMYPNPSGEPWHTRKPRFSKE 254


>02_01_0075 -
           522554-522616,522742-522748,523033-523136,523237-523368,
           525209-525401,525978-526330,526693-526791,526864-526935,
           527062-527213,527338-527386,527755-527885,528067-528307,
           528392-528565,528656-528797,529236-529282,529370-529450,
           530170-530271,530345-530440,531437-531444,531575-531616,
           531830-531894,534761-534853,534888-534959,535303-535509,
           536318-537226,537503-538158
          Length = 1429

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 254 GSAGWLRAPPEELSPPRALPAPVPQSRASVF*GPS 358
           G A    +PP    PPR L +P+P+SRA     PS
Sbjct: 3   GLAAADNSPPVAAPPPRRLSSPLPRSRAPPSPSPS 37


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 477 EDDDGMIPYAAFLKKVMA*KTSQLVISLV 391
           +D+DGM  Y AF++KV++ +  QL IS +
Sbjct: 535 DDEDGMPRYYAFIQKVLSLEPFQLKISFL 563


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 274 PQPARAPSHVDIPYNILDTDKPLFYTNNIISTVLYNFL 161
           PQP +APS   I  N  + + P+ Y  N +ST  YN L
Sbjct: 53  PQP-QAPSVRTICCNDREANAPVGYKGNSVSTTKYNVL 89


>03_05_1060 -
           30023407-30023553,30024274-30024390,30024958-30025129,
           30026116-30026198,30026299-30026917,30027157-30027280,
           30027637-30027745,30028214-30028399,30028716-30028763,
           30028808-30028979,30029034-30029209
          Length = 650

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 251 AGSAGWLRAPPEELSPPRALPAPVPQSRA 337
           AG AG L     E +P  ALP P P + A
Sbjct: 418 AGDAGVLHGKAHEGAPSMALPPPAPSAAA 446


>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 YVQSKVESCTKQLILCCSYKKGV 213
           Y+  KV SCT++ IL   Y KG+
Sbjct: 188 YLDEKVGSCTRRTILYQEYVKGI 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,404
Number of Sequences: 37544
Number of extensions: 211298
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)