Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)                    27   7.1  
SB_53338| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 256 PSHVDIPYNILDTDKPLFYTNNIISTVLYNFLPLTVHTKVRLNIL*NTRCACF 98
           P  +DIP  +L+ D  +F  +   +++LY    LTV      N L + RC C+
Sbjct: 98  PDQLDIPAYVLEYDMKIF-PSYYDTSMLYTAFTLTVLLSNLTNALYDLRCKCY 149


>SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)
          Length = 302

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 241 IPYNILDTDKPLFYTNNIISTVLYNF 164
           +P+ +L   K L YTN++++ ++Y+F
Sbjct: 231 LPHQLLFACKFLHYTNSLVNPIIYSF 256


>SB_53338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 244 DIPYNILDTDKPLFYTNNIISTVLYNF 164
           ++PY  +   K L YTN+ ++ ++Y F
Sbjct: 238 EVPYKFVYFTKLLQYTNSFVNPIIYTF 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,247
Number of Sequences: 59808
Number of extensions: 247597
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)