Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305E05f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.26
X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4... 34 0.26
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.26
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 34 0.26
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 34 0.26
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 34 0.26
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 34 0.26
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 34 0.26
Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine r... 30 4.3
X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25... 30 4.3
U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine r... 30 4.3
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 30 4.3
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 30 4.3
BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor, n... 30 4.3
BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor, n... 30 4.3
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 30 4.3
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 30 4.3
AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor, n... 30 4.3
AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein. 30 4.3
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 30 4.3
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 30 4.3
AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic acet... 30 4.3
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 30 4.3
Y12661-1|CAA73210.1| 616|Homo sapiens neuro-endocrine specific ... 30 5.7
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 30 5.7
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 30 5.7
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 30 5.7
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 29 7.5
BX537838-1|CAD97850.1| 1410|Homo sapiens hypothetical protein pr... 29 7.5
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 29 7.5
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 29 7.5
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 29 7.5
BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor... 29 9.9
AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3 pro... 29 9.9
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4
subunit protein.
Length = 451
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 170 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 206
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 216 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 252
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
PS+VD+ Y+ + KPLFYT N II VL L + V
Sbjct: 217 PSYVDVTYDFIIKRKPLFYTINLIIPCVLTTLLAILV 253
>Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25 to
477) protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266
>BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266
>AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein.
Length = 504
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 217 APWPRPPPRRFSPPRRMLPPPPMWRRS 243
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 163 APWPRPPPRRFSPPRRMLPPPPMWRRS 189
>AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 2 protein.
Length = 502
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 253 SHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 149
++VDI Y+ + KPLFYT N II VL L + V
Sbjct: 220 TYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILV 255
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 260 AGWLRAPPEELSPPRALPAPVPQSRAS 340
A W R PP SPPR + P P R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266
>Y12661-1|CAA73210.1| 616|Homo sapiens neuro-endocrine specific
protein VGF protein.
Length = 616
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 272 RAPPEELSPPRALPAP 319
+APPE + PPRA PAP
Sbjct: 486 KAPPEPVPPPRAAPAP 501
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNIIS-TVLYNFLPLTVH 146
PA+ H + + +L KPLFY NII+ VL + + + +H
Sbjct: 225 PAQEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAILIH 266
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNIIS-TVLYNFLPLTVH 146
PA+ H + + +L KPLFY NII+ VL + + + +H
Sbjct: 170 PAQEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAILIH 211
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNIIS-TVLYNFLPLTVH 146
PA+ H + + +L KPLFY NII+ VL + + + +H
Sbjct: 225 PAQEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAILIH 266
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNI-ISTVLYNFL 161
P +PS DI + ++ KPLFY NI + VL +F+
Sbjct: 227 PLDSPSRQDITFYLIIRRKPLFYIINILVPCVLISFM 263
>BX537838-1|CAD97850.1| 1410|Homo sapiens hypothetical protein
protein.
Length = 1410
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 257 SAGWLRAPPEELSPPRALPAPVPQSRASVF*GPSHRTFVAGKDLITK 397
SAG A PEEL P A P P S A+ P+H +A L+T+
Sbjct: 889 SAGATPAEPEELLTPLAPALPSPASTATPPPTPTHPQALALPPLVTE 935
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNI-ISTVLYNFL 161
P +PS DI + ++ KPLFY NI + VL +F+
Sbjct: 227 PLDSPSRQDITFYLIIRRKPLFYIINILVPCVLISFM 263
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNI-ISTVLYNFL 161
P +PS DI + ++ KPLFY NI + VL +F+
Sbjct: 227 PLDSPSRQDITFYLIIRRKPLFYIINILVPCVLISFM 263
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 268 PARAPSHVDIPYNILDTDKPLFYTNNI-ISTVLYNFL 161
P +PS DI + ++ KPLFY NI + VL +F+
Sbjct: 227 PLDSPSRQDITFYLIIRRKPLFYIINILVPCVLISFM 263
>BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor
inducible protein.
Length = 615
Score = 29.1 bits (62), Expect = 9.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 275 APPEELSPPRALPAP 319
APPE + PPRA PAP
Sbjct: 486 APPEPVPPPRAAPAP 500
>AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3
protein.
Length = 615
Score = 29.1 bits (62), Expect = 9.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 275 APPEELSPPRALPAP 319
APPE + PPRA PAP
Sbjct: 486 APPEPVPPPRAAPAP 500
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,494,275
Number of Sequences: 237096
Number of extensions: 1178102
Number of successful extensions: 3937
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3936
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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