Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical ...    29   2.7  
U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    27   8.1  
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    27   8.1  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    27   8.1  

>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 148 VQSKVESCTKQLILCCSYKKGVCPYLRCYTGCRRGWE 258
           V   VE C  Q+   C  +   C Y +   G +RGW+
Sbjct: 520 VYEPVEFCGAQMHTNCPSEDSFCKYCKALRGTQRGWK 556


>AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical
           protein Y51H1A.7 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 LRAPPEELSPPRALPAPVPQSRASV 343
           LRAP EE  PP A  APVP    ++
Sbjct: 211 LRAPLEEEKPPVATMAPVPDEHKAI 235


>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 477 EDDDGMIPYAAFLKKVMA 424
           ED +GM+ Y  F+KKV+A
Sbjct: 129 EDGEGMVKYEDFIKKVLA 146


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 477 EDDDGMIPYAAFLKKVMA 424
           ED +GM+ Y  F+KKV+A
Sbjct: 129 EDGEGMVKYEDFIKKVLA 146


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 GSAGWLRAPPEELSPPRALPAPVPQSRAS 340
           GS G ++  P++  P ++ P P PQ + S
Sbjct: 473 GSYGGMQQQPQQQQPMQSAPPPAPQRQTS 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,018
Number of Sequences: 27780
Number of extensions: 191790
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)