Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32130.1 68415.m03927 expressed protein contains Pfam domain,...    29   2.5  
At5g07080.1 68418.m00802 transferase family protein similar to 1...    27   5.8  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    27   5.8  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   5.8  
At4g08460.2 68417.m01397 expressed protein                             27   7.7  
At4g08460.1 68417.m01396 expressed protein                             27   7.7  
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    27   7.7  

>At2g32130.1 68415.m03927 expressed protein contains Pfam domain,
           PF04859: Plant protein of unknown function (DUF641)
          Length = 157

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 516 VKSLKSQRDCMDPEDDDGMIPYAAFLKKVMA*KTS 412
           V + KSQ    D EDDDG   + A + K+ A  TS
Sbjct: 12  VGTFKSQNPNFDDEDDDGDCLFKAVVAKIFASTTS 46


>At5g07080.1 68418.m00802 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
           cuspidata, AF193765, EMBL:AF193765; contains Pfam
           transferase family domain PF00248
          Length = 450

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 432 PSSGMLRRGSCRHRLQGPCSP 494
           P +G L RGS  HRL+  CSP
Sbjct: 83  PLAGKLHRGSHDHRLELRCSP 103


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 516 VKSLKSQRDCMDPEDDDGMIPYAAFLKKVMA*KTS 412
           V + KSQ+   D EDDDG     A + K++A  TS
Sbjct: 255 VGTFKSQKPNFDDEDDDGDSLLKALVAKLVASTTS 289


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 278 PPEELSPPRALPAPVPQS 331
           PP E  PP +LP P P+S
Sbjct: 147 PPPESPPPESLPPPSPES 164


>At4g08460.2 68417.m01397 expressed protein
          Length = 274

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 LILCCSYKKGVCPYLRCYTGCR 246
           ++LC SY KG  PY+ C TG R
Sbjct: 61  VLLCSSYHKGCRPYM-CATGNR 81


>At4g08460.1 68417.m01396 expressed protein
          Length = 274

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 LILCCSYKKGVCPYLRCYTGCR 246
           ++LC SY KG  PY+ C TG R
Sbjct: 61  VLLCSSYHKGCRPYM-CATGNR 81


>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 187 LCCSYKKGVCPYL 225
           LCC ++ G CPY+
Sbjct: 96  LCCKFRAGTCPYI 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,255
Number of Sequences: 28952
Number of extensions: 169694
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)