Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   9e-23
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              42   4e-04
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   42   4e-04
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  42   4e-04
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                42   4e-04
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           42   4e-04
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       42   4e-04
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   4e-04
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          42   4e-04
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    39   0.003
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    38   0.007
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     37   0.009
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.015
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   9.4  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  103 bits (247), Expect = 9e-23
 Identities = 54/112 (48%), Positives = 66/112 (58%)
 Frame = +1

Query: 7   MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 186
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 187 TNIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 342
             + +G                                   SDDDMGFGLFD
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 10  RRPVNCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 66  RRPVNCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 634 RRPVNCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 45  RRPVNCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 7   RRPVNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 47  RRPVNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520  RRPVNCNTTHYRANW 476
            RRPVNCNTTHYRANW
Sbjct: 1885 RRPVNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 45  RRPVNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 7   RRPVNCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 39  RRPVNCNTTHYRANW 53


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 88  RRPVNCNTTHYRANW 102


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 66  RRPVNCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 77  RRPVNCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 53  RRPVNCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRANW 476
           RRPVNCNTTHYRANW
Sbjct: 77  RRPVNCNTTHYRANW 91


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 455 TRGGARYPIRPIVSRITIHWPS 520
           T GGA  PIRPIVSRITIHWP+
Sbjct: 34  TDGGA--PIRPIVSRITIHWPA 53


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = +2

Query: 455 TRGGARYPIRPIVSRITIHWPS 520
           T GGA  PIRPIVS ITIHWPS
Sbjct: 36  TVGGA--PIRPIVSHITIHWPS 55


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRAN 479
           RRPVNCNTTHYRAN
Sbjct: 84  RRPVNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 520 RRPVNCNTTHYRAN 479
           RRPVNCNTTHYRAN
Sbjct: 27  RRPVNCNTTHYRAN 40


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 186 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 40
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 479 IRPIVSRITIHWPS 520
           IRPIVSRITIHWPS
Sbjct: 18  IRPIVSRITIHWPS 31


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 479 IRPIVSRITIHWPS 520
           +RP+VSRITIHW S
Sbjct: 33  LRPVVSRITIHWTS 46


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 310 SDDDMGFGLFD 342
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 485 PIVSRITIHWPS 520
           P +SRITIHWPS
Sbjct: 77  PYMSRITIHWPS 88


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 195  DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 73
            D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2100 DLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 191  LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 30
            L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,528,914
Number of Sequences: 59808
Number of extensions: 193154
Number of successful extensions: 494
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)