Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E03f
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   126   2e-30
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   1.2  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   3.8  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  126 bits (304), Expect = 2e-30
 Identities = 55/68 (80%), Positives = 61/68 (89%)
 Frame = +1

Query: 7   IRHEAQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQV 186
           I    QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+VTHE+RHFIYFYLG V
Sbjct: 18  IHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTV 77

Query: 187 AILLFKSG 210
           A LLFKSG
Sbjct: 78  AFLLFKSG 85


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 309 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 184
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 270 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 148
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,750
Number of Sequences: 5004
Number of extensions: 35537
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)