Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E03f
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               140   8e-34
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   4e-09
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)                    30   0.96 
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    27   9.0  

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  140 bits (338), Expect = 8e-34
 Identities = 62/63 (98%), Positives = 63/63 (100%)
 Frame = +1

Query: 22  QALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLF 201
           QALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLF
Sbjct: 27  QALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLF 86

Query: 202 KSG 210
           KSG
Sbjct: 87  KSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 25  ALEKFNIEKDIAA-FIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILL 198
           A EKF+   + AA  IK+  DKK+  +WH +VG  FG  +THE R+ +Y + G+   +L
Sbjct: 47  ACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGKYTTIL 105


>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
          Length = 354

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 64  FIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFY 174
           ++K+E D    PT+  + G  +G     +T+HFIY Y
Sbjct: 42  YVKREGDPLVRPTFP-VAGFTYGIQYAAKTKHFIYVY 77


>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 280 ADSHARLGLWYIPIGS*QPECGRRRQG*CWCERFSSECESGC 405
           AD +  +GLW+  +G         +   C  E+F  EC+  C
Sbjct: 308 ADVYYNIGLWFKSLGDNGQAMVNFKNALCIYEKFGEECKQAC 349


>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 315 NVPQPEPRMRICKGYPSDNTASAANKKIEVMLNGLT 208
           N P  EP + +  G P DNT  ++  KI V  NG +
Sbjct: 7   NRPVHEP-LAVLSGVPKDNTIPSSAPKISVSKNGFS 41


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 346 CHTLAASYLWECTTARASHENLQRLSI**YCVRC*QKNR 230
           CH   + Y  +C   R S E+   L +  YC  C +K R
Sbjct: 184 CHECHSHYHQKCHEPRVSDEDANDLRLVWYCTLCIKKMR 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,226
Number of Sequences: 59808
Number of extensions: 277247
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)