Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305E03f
(509 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 137 4e-33
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 77 7e-15
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 63 1e-10
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 63 1e-10
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 29 2.6
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 29 2.6
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 4.5
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 27 7.9
AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical ... 27 7.9
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 137 bits (332), Expect = 4e-33
Identities = 60/63 (95%), Positives = 63/63 (100%)
Frame = +1
Query: 22 QALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLF 201
QALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLF
Sbjct: 27 QALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLF 86
Query: 202 KSG 210
KSG
Sbjct: 87 KSG 89
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 77.0 bits (181), Expect = 7e-15
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +1
Query: 19 AQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILL 198
A+++ +++E DIA +K FD++Y P WHCI G++FGS+VT E FIYF +G +A +L
Sbjct: 78 AKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFML 137
Query: 199 FKS 207
FK+
Sbjct: 138 FKT 140
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +1
Query: 16 EAQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAIL 195
EAQ L +NI+KD+AAF+K+E DKK+ TWH I G+ FGS V++E HFI +V ++
Sbjct: 27 EAQRL--YNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVM 84
Query: 196 LFKSG 210
++K G
Sbjct: 85 IYKCG 89
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/60 (43%), Positives = 44/60 (73%)
Frame = +1
Query: 25 ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 204
AL+ IE +IA+F+K++FD KY W C+VGRNFGS++ + FI+F + +++++LF+
Sbjct: 72 ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/60 (43%), Positives = 44/60 (73%)
Frame = +1
Query: 25 ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 204
AL+ IE +IA+F+K++FD KY W C+VGRNFGS++ + FI+F + +++++LF+
Sbjct: 54 ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 125 LRPTMQCQVGLYFLSN 78
L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 125 LRPTMQCQVGLYFLSN 78
L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 273 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 124
Y D + + KI +L LTA K + S V+V EV HI+ I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 34 KFNIEK-DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETR--HFIYFYLGQVAIL 195
KFN ++ ++ + K + ++P C+ + G YV H R + Y G+ A++
Sbjct: 369 KFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTVVEQYQGKAAVM 425
>AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical
protein Y10G11A.3 protein.
Length = 134
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 25 ALEKFNIEKDIAAFIKKEFDKK 90
AL+ IE +IA+F+K++FD K
Sbjct: 71 ALQLCGIENEIASFMKRKFDAK 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,752
Number of Sequences: 27780
Number of extensions: 209105
Number of successful extensions: 515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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